F11416

RIKEN Arabidopsis full-length cDNA overexpressed Arabidopsis lines

Original: F11416

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage
Phenotypes
T2 seed (PO:0009010)
  • increased size (PATO:0000586)
    (Seed::Shape::large)
  • increased length (PATO:0000573)
    (Seed::Shape::long)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: F11416

Determination of introduced cDNA(s)

  • RAFL09-81-E19 - RIKEN Arabidopsis Full-length cDNAs - Original: RAFL09-81-E19 - Resource: pda08849

    full reading [+] show sequence

    Nucleotide sequence: RAFL09-81-E19 - full reading
    TGACACATCT AAATTTTTCT CCATATTACA AAAGAACTAA AGAAGATGGA 
    TCAGTCATCA TCAACGTTGC TCATAAACCA GAGAAAGTCA TCATCGTCTC
    CGACTAGGAT CCCACCTAAG CAGAAGAGGA AGTCAACGAC TACGCACAAA
    CCCATCAAAG TCCGTTACAT ATCAAATCCG ATGAGAGTCG AGACTTGTCC
    TTCTAAGTTC AGAGAGCTTG TTCAAGAACT CACCGGTCAA GACGCCGCTG
    ATCTACCACC GTCGCCCACC ACTTTTACCG CCGTAGATCT CCACCGTCCG
    TGTGAGTCGG AGATGAACTT AGAGCCGTTG GATGGAGAGG TCCGTGGAGA
    GTATTATTCA CCGTTGGATG AGGAAGTGTT TAATGCTCCT CAGATGTCGG
    CAGGTCTTTC TGGTTTTTTC TCGTCTGGAT TTTACAATGT TAACGCTTTA
    GGAAGCATTG GTTCTCTCTG AATTTTAAAC TATGAATGTT TTGTTTCGGC
    ACTGAAACAC CGATCACGAA GAATAAACCA TCTATAGTTT TAGGGTTTTC
    ATCAAAACCT ATATATGGAT ATATTACATA TATAGTTTTT TTTCTCGCGA
    ATTATTTACG TTTGTGAGTA TATATAGAAA TCTTTCATTT GTTTGTGGTT
    TTTTTATTTT ATAATAATAA TCAAACCGTA TTAGTTTTAG TTGGGTTTAT
    TGGTGTAGTT ATGTAATAAT TAACCTCAAA ATCCCAATTT GGTGGT

    Gene models with high sequence identity

    1. AT2G41180.1 [+] show detail - VQ motif-containing protein
      E-value: 0; Score: 100.00

     

    InterPro Scan Digest

    See the detailed result >

    AT2G41180.1

    Model type
    Protein coding
    Short Description
    VQ motif-containing protein
    Computational Description
    VQ motif-containing protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: VQ (InterPro:IPR008889); BEST Arabidopsis thaliana protein match is: sigma factor binding protein 1 (TAIR:AT3G56710.1); Has 49 Blast hits to 49 proteins in 11 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 49; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR