F11416

RIKEN Arabidopsis full-length cDNA overexpressed Arabidopsis lines

Original: F11416

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T2 seed (PO:0009010)
  • increased size (PATO:0000586)
    (Seed::Shape::large)
  • increased length (PATO:0000573)
    (Seed::Shape::long)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: F11416

Determination of introduced cDNA(s)

  • RAFL09-81-E19 - RIKEN Arabidopsis Full-length cDNAs - Original: RAFL09-81-E19 - Resource: pda08849

    full reading [+] show sequence

    Nucleotide sequence: RAFL09-81-E19 - full reading 
    TGACACATCT AAATTTTTCT CCATATTACA AAAGAACTAA AGAAGATGGA 
    TCAGTCATCA TCAACGTTGC TCATAAACCA GAGAAAGTCA TCATCGTCTC 
    CGACTAGGAT CCCACCTAAG CAGAAGAGGA AGTCAACGAC TACGCACAAA 
    CCCATCAAAG TCCGTTACAT ATCAAATCCG ATGAGAGTCG AGACTTGTCC 
    TTCTAAGTTC AGAGAGCTTG TTCAAGAACT CACCGGTCAA GACGCCGCTG 
    ATCTACCACC GTCGCCCACC ACTTTTACCG CCGTAGATCT CCACCGTCCG 
    TGTGAGTCGG AGATGAACTT AGAGCCGTTG GATGGAGAGG TCCGTGGAGA 
    GTATTATTCA CCGTTGGATG AGGAAGTGTT TAATGCTCCT CAGATGTCGG 
    CAGGTCTTTC TGGTTTTTTC TCGTCTGGAT TTTACAATGT TAACGCTTTA 
    GGAAGCATTG GTTCTCTCTG AATTTTAAAC TATGAATGTT TTGTTTCGGC 
    ACTGAAACAC CGATCACGAA GAATAAACCA TCTATAGTTT TAGGGTTTTC 
    ATCAAAACCT ATATATGGAT ATATTACATA TATAGTTTTT TTTCTCGCGA 
    ATTATTTACG TTTGTGAGTA TATATAGAAA TCTTTCATTT GTTTGTGGTT 
    TTTTTATTTT ATAATAATAA TCAAACCGTA TTAGTTTTAG TTGGGTTTAT 
    TGGTGTAGTT ATGTAATAAT TAACCTCAAA ATCCCAATTT GGTGGT

    Gene models with high sequence identity

    1. AT2G41180.1 [+] show detail - VQ motif-containing protein
      E-value: 0; Score: 100.00

     

    InterPro Scan Digest

    See the detailed result >

    AT2G41180.1

    Model type
    Protein coding
    Short Description
    VQ motif-containing protein
    Computational Description
    VQ motif-containing protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: VQ (InterPro:IPR008889); BEST Arabidopsis thaliana protein match is: sigma factor binding protein 1 (TAIR:AT3G56710.1); Has 49 Blast hits to 49 proteins in 11 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 49; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR