F11516

RIKEN Arabidopsis full-length cDNA overexpressed Arabidopsis lines

Original: F11516

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: F11516

Determination of introduced cDNA(s)

RAFL09-19-C22 - RIKEN Arabidopsis Full-length cDNAs - Original: RAFL09-19-C22 - Resource: pda05490

full reading [+] show sequence

TGCAGGTTTT GAATTTGAAA ACGGAGTTAG AGGAAGCTCG TAATTCAAAT 
GTAGAGCTTG AGTTGAATAA TAGGAAGCTT TCTCAGGATC TTGTTTCAGC 
TGAAGCTAAG ATCTCATCTC TTTCTTCTAA CGACAAGCCA GCTAAAGAAC 
ATCAAAACAG CAGATTCAAA GATATCCAGA GGTTAATAGC TAGCAAATTA 
GAGCAACCCA AGGTTAAGAA GGAGGTAGCA GTAGAGTCAT CAAGATTATC 
TCCACCATCA CCTTCTCCTT CAAGATTACC GCCAACACCG CCATTACCGA 
AGTTTTTGGT GTCTCCAGCT AGCAGTTTAG GTAAAAGAGA TGAAAATTCT 
TCACCCTTTG CACCTCCAAC ACCACCGCCT CCGCCGCCAC CACCACCACC 
TAGACCTCTT GCTAAAGCAG CTCGTGCTCA GAAGTCTCCT CCAGTTTCAC 
AGCTATTTCA GTTGTTGAAT AAGCAAGATA ATAGTAGAAA CCTTTCTCAG 
TCTGTTAATG GGAATAAGTC TCAAGTTAAC AGTGCTCACA ACAGTATAGT 
CGGAGAAATT CAAAACCGTT CTGCGCATCT CATCGCTATA AAAGCTGATA 
TAGAGACAAA AGGGGAGTTT ATCAATGATC TTATCCAGAA AGTTCTGACC 
ACTTGTTTTT CGGATATGGA AGATGTCATG AAATTTGTGG ATTGGCTTGA 
TAAAGAACTG GCAACTCTGG CTGATGAGCG TGCTGTGCTT AAGCATTTCA 
AGTGGCCTGA GAAGAAAGCC GATACCCTGC AAGAGGCTGC AGTTGAATAC 
CGTGAGCTAA AGAAACTGGA AAAAGAACTT TCTTCCTACT CTGATGATCC 
GAACATTCAC TACGGTGTTG CCCTGAAGAA AATGGCCAAC TTACTAGACA 
AGTCGGAGCA GAGGATAAGG AGGCTAGTCA GATTACGTGG CTCATCCATG 
CGTTCTTACC AGGACTTTAA GATCCCAGTC GAGTGGATGC TTGACTCGGG 
AATGATATGC AAGATCAAAA GAGCATCGAT CAAACTTGCG AAAACCTACA 
TGAATAGAGT AGCGAATGAG CTGCAATCAG CTCGTAACTT GGATAGAGAG 
TCTACTAAAG AAGCATTGCT TCTTCAAGGC GTCCGATTTG CTTACAGAAC 
GCACCAGTTT GCGGGAGGGC TCGATCCAGA GACATTGTGT GCATTAGAAG 
AGATTAAGCA ACGTGTTCCG AGTCATCTCC GGCTGGCACG GGGGAATATG 
GCCGGAAATC TGTCGTAGAA AAGTAATCAG AGAAATGTGA GGCATATGGG 
CTGTGGTTCT GGCTACAAAA TTCGTTATTT GTGTTAATAG TGTTTGGTGA 
GTCAGGTTGT GTCCCATTTA ATAATAATGT TATAATGTAT CTAAAATGTT 
CCTCCAGTGA ATTACTCAAT TAATTTTTGC GCC

Gene models with high sequence identity

AT1G48280.1 [+] show detail - hydroxyproline-rich glycoprotein family protein
E-value: 0; Score: 100.00

InterPro Scan Digest

Program	Description	E-value
Coil	coiled-coil	0
Coil	coiled-coil	0
Coil	coiled-coil	0

See the detailed result >

AT1G48280.1

Model type: Protein coding
Short Description: hydroxyproline-rich glycoprotein family protein
Computational Description: hydroxyproline-rich glycoprotein family protein; INVOLVED IN: biological_process unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: Hydroxyproline-rich glycoprotein family protein (TAIR:AT3G25690.3); Has 10788 Blast hits to 7587 proteins in 614 species: Archae - 16; Bacteria - 992; Metazoa - 4057; Fungi - 1231; Plants - 2229; Viruses - 567; Other Eukaryotes - 1696 (source: NCBI BLink).
Link: InterPro Scan - TAIR