F11535

RIKEN Arabidopsis full-length cDNA overexpressed Arabidopsis lines

Original: F11535

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: F11535

Determination of introduced cDNA(s)

  • RAFL04-17-E23 - RIKEN Arabidopsis Full-length cDNAs - Original: RAFL04-17-E23 - Resource: pda00633

    full reading [+] show sequence

    Nucleotide sequence: RAFL04-17-E23 - full reading 
    AGTCATGTTT CCATAGACAT AATCTCTCAC CATTGTTTTT CTCTGCAAAA 
    CTAAAGAAAC AAAAAAAGAA AAATCGGAGA AACCAAGAAA AAAGAAATGG 
    GAAGTGTAGA AGCAGGAGAA AAGAAGGCTT TAGGATGGGC TGCAAGAGAT 
    CCTTCTGGTG TTCTCTCTCC TTACTCCTAC ACTTTAAGGA GCACAGGAGC 
    AGATGATGTG TATATAAAGG TTATATGCTG TGGAATATGC CATACTGATA 
    TTCACCAAAT TAAAAATGAT CTTGGAATGT CTAATTATCC TATGGTTCCT 
    GGGCACGAGG TAGTAGGTGA GGTGTTGGAA GTGGGATCAG ATGTGAGCAA 
    GTTCACCGTA GGAGATGTAG TCGGAGTCGG CGTGGTCGTT GGATGCTGCG 
    GTAGCTGCAA ACCATGCAGC TCAGAACTTG AGCAGTATTG TAACAAGAGA 
    ATCTGGAGTT ACAACGATGT CTACACCGAT GGAAAACCTA CTCAAGGTGG 
    CTTCGCCGAC ACCATGATCG TCAATCAAAA GTTTGTGGTG AAGATTCCAG 
    AAGGAATGGC GGTGGAGCAG GCTGCACCGC TACTCTGCGC GGGAGTAACG 
    GTTTATAGTC CGTTGAGCCA CTTCGGTCTA ATGGCGAGTG GGCTTAAAGG 
    AGGGATTCTA GGGTTAGGTG GAGTAGGGCA CATGGGTGTG AAGATAGCTA 
    AAGCAATGGG ACACCATGTG ACTGTGATAA GCTCAT

    Gene models with high sequence identity

    1. AT3G19450.1 [+] show detail - GroES-like zinc-binding alcohol dehydrogenase family protein
      E-value: 0; Score: 100.00

     

    InterPro Scan Digest

    Program Description E-value
    superfamily GroES-like 6.3e-49
    superfamily NAD(P)-binding domain 0.0000000043
    Gene3D no description 3.8e-55
    PatternScan Alcohol dehydrogenase, zinc-containing, conserved site 0
    HMMPanther ZINC-TYPE ALCOHOL DEHYDROGENASE-RELATED 2.6e-65
    HMMPanther Alcohol dehydrogenase superfamily, zinc-containing 2.6e-65
    HMMPfam Alcohol dehydrogenase GroES-like 2.6e-27

    See the detailed result >

    AT3G19450.1

    Model type
    Protein coding
    Short Description
    GroES-like zinc-binding alcohol dehydrogenase family protein
    Curator Summary
    Encodes a catalytically active cinnamyl alcohol dehydrogenase which uses p-coumaryl aldehyde as a preferred substrate. It can also use caffeyl, coniferyl and d-hydroxyconiferyl aldehydes as substrates.
    Computational Description
    ATCAD4; CONTAINS InterPro DOMAIN/s: GroES-like (InterPro:IPR011032), Alcohol dehydrogenase GroES-like (InterPro:IPR013154), Alcohol dehydrogenase, zinc-containing, conserved site (InterPro:IPR002328), Alcohol dehydrogenase, C-terminal (InterPro:IPR013149), Alcohol dehydrogenase superfamily, zinc-containing (InterPro:IPR002085); BEST Arabidopsis thaliana protein match is: cinnamyl alcohol dehydrogenase 5 (TAIR:AT4G34230.1); Has 40533 Blast hits to 40509 proteins in 3018 species: Archae - 756; Bacteria - 27152; Metazoa - 1406; Fungi - 3053; Plants - 2651; Viruses - 3; Other Eukaryotes - 5512 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR