F11611

RIKEN Arabidopsis full-length cDNA overexpressed Arabidopsis lines

Original: F11611

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T1  
cauline leaf (PO:0000013)
  • epinastic (PATO:0000945)
    (Cauline leaf::Shape::epinastic)
rosette leaf (PO:0000014)
  • present in greater numbers in organism (PATO:0000470)
    (Rosette leaf::Number::many)
stem (PO:0009047)
  • increased thickness (PATO:0000591)
    (Stem::Shape::thick)
  • abnormal (PATO:0000460)
    (Stem::Others)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: F11611

Determination of introduced cDNA(s)

  • RAFL06-68-M06 - RIKEN Arabidopsis Full-length cDNAs - Original: RAFL06-68-M06 - Resource: pda03311

    full reading [+] show sequence

    Nucleotide sequence: RAFL06-68-M06 - full reading 
    ACATAAAAAT CTCTTCGCCG CACAATTGCT CCAATCTGTT TCTTCTAGCC 
    GGCCAAAATG GGTTTTAAGA GATTCGTGGA GATTGGGAGA GTGGCGCTCG 
    TTAACTACGG CGAGGATTAT GGAAAGCTCG TGGTTATCGT CGATGTAGTC 
    GACCAAAACA GGGCACTTGT GGATGCCCCT GACATGGAGA GAATCCAGAT 
    GAATTTGAAG AGGTTGTCTC TTACTGACAT CGTCATTGAT ATCAACAGAG 
    TTCCCAAGAA GAAGGTTTTG ATTGAGGCAA TGGAGAAGGC TGATGTGAAG 
    AACAAGTGGG AGAAGAGTTC ATGGGGTAGG AAACTTATTG TGCAGAAGAG 
    AAGAGCTGCC CTCAATGATT TTGACAGGTT CAAGATCATG TTGGCCAAAA 
    TCAAGAGGGC TGGTATTGTG AGGCAGGAGC TTGCTAAGCT AAAAAGGGAG 
    ATCGCTGCTT GATTTCTTAA TTATGATCCA TTACCAAATC TTATTTTTGC 
    AACTGTTTTT TTAGTGCAAA TTATGACAAG TTGAGTTTTT TTTAGTGCAA 
    ATTATGATAT CAATTTTGCT GATTCCGGGC TACTAAATAG TGAATTTTTT 
    TTGCTATCGG ATATTATTAT TTTAGTTTAG TTTTTCTTTC TAAAAAAAAA 
    AAAAGAAAAA AAAAAAAAAA AA

    Gene models with high sequence identity

    1. AT2G20450.1 [+] show detail - Ribosomal protein L14
      E-value: 0; Score: 100.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMPanther 60S RIBOSOMAL PROTEIN L14 2.6e-63
    HMMPfam Ribosomal protein L14 1.5e-29

    See the detailed result >

    AT2G20450.1

    Model type
    Protein coding
    Short Description
    Ribosomal protein L14
    Computational Description
    Ribosomal protein L14; FUNCTIONS IN: structural constituent of ribosome; INVOLVED IN: translation, ribosome biogenesis; LOCATED IN: ribosome, cytosolic large ribosomal subunit, endoplasmic reticulum, vacuole; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Ribosomal protein L14 (InterPro:IPR002784); BEST Arabidopsis thaliana protein match is: Ribosomal protein L14 (TAIR:AT4G27090.1); Has 732 Blast hits to 732 proteins in 320 species: Archae - 80; Bacteria - 0; Metazoa - 273; Fungi - 143; Plants - 110; Viruses - 0; Other Eukaryotes - 126 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR