F11636

RIKEN Arabidopsis full-length cDNA overexpressed Arabidopsis lines

Original: F11636

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage
Phenotypes
T1  
whole plant (PO:0000003)
  • decreased height (PATO:0000569)
    (Adult plant::Plant height::short)
cauline leaf (PO:0000013)
  • decreased size (PATO:0000587)
    (Cauline leaf::Shape::small)
  • dark green (PATO:0001249)
    (Cauline leaf::Color::dark)
rosette leaf (PO:0000014)
  • dark green (PATO:0001249)
    (Rosette leaf::Color::dark)
  • decreased size (PATO:0000587)
    (Rosette leaf::Shape::small)
  • increased width (PATO:0000600)
    (Rosette leaf::Shape::wide)
  • present in fewer numbers in organism (PATO:0001997)
    (Rosette leaf::Number::few)
sporophyte vegetative stage (PO:0007134)
  • decreased speed (PATO:0000304)
    (Adult plant::Growth::slow)
fruit (PO:0009001)
  • decreased length (PATO:0000574)
    (Silique::Shape::short)
seed (PO:0009010)
  • present in fewer numbers in organism (PATO:0001997)
    (Seed::Number::few)
stem (PO:0009047)
  • abnormal (PATO:0000460)
    (Stem::Others)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: F11636

Determination of introduced cDNA(s)

  • RAFL09-86-P10 - RIKEN Arabidopsis Full-length cDNAs - Original: RAFL09-86-P10 - Resource: pda17878

    full reading [+] show sequence

    Nucleotide sequence: RAFL09-86-P10 - full reading
    CCCGAATTTT TACTCTCCTC CTTCACGTCT TTTCCTCTTA ATTTTTTCTA 
    GGAAAATTCT CAAATCCATC TCCGCGATAC GAACAGAGAG AAGAAGACTT
    AGAAAAATGG CTGTTCAACC TACAAGAATA GGTCTAGCTG GACTTGCTGT
    GATGGGTCAG AACCTAGCTC TCAACATTGC AGAGAAAGGC TTCCCAATCT
    CTGTTTACAA CAGAACTACT TCCAAAGTTG ATGAGACCGT CGAACGAGCC
    AAAAAGGAAG GCAATCTTCC TCTTTACGGC TTCCATGACC CCGAGTCTTT
    TGTCAAGTCC ATTCAGAAGC CACGCGTTAT TATCATGCTT GTTAAGGCTG
    GTTCTCCCGT TGACCAGACC ATCAAGACCC TCTCTGCTTA TTTGGAGAAA
    GGTGACTGTA TTGTCGATGG TGGTAATGAA TGGTATGAGA ACACTGAGAG
    GAGAGAAAAA GCCGTGGCGG AGAACGGTTT CCTCTACCTT GGAATGGGAG
    TTTCTGGTGG TGAAGAAGGT GCTCGTAATG GCCCATCTAT GATGCCTGGA
    GGCTCTTATG AAGCCTACAA GAATATCGAA GACATTGTTC TCAAGGTTGC
    TGCTCAGGTT AGGGATAGTG GTCCCTGTGT GACTTATATC GGTAAGGGCG
    GGTCTGGAAA CTTTGTCAAA ATGGTCCACA ATGGGATCGA GTACGGTGAT
    ATGCAGCTGA TTGCAGAAGC TTATGACGTC CTCAAGTCTG TTGGTAAATT
    ATCGAATGAG GAGCTTCACA GTGTCTTCTC TGACTGGAAC AAAGGTGAGC
    TTGAGAGTTT CTTGGTAGAG ATCACAGCAG ATATTTTCGG GATCAAGGAC
    GATAAGGGAG ATGGGCATTT GGTTGACAAG GTCTTGGACA AAACCGGCAT
    GAAAGGCACA GGAAAGTGGA CCGTGCAGCA AGCTGCTGAG CTATCTGTTC
    CTGCTCCCAC CATTGAATCC TCTCTTGATG CGAGGTTCCT TAGCGGGCTT
    AAAGATGAAC GTGTGCAAGC AGCTAAAGTC TTCAAGGCAG GTGGGTTTGG
    AGATATCTTG ACCGATCAGA AAGTTGACAA GAAACAGCTA GTCGATGACG
    TGAGGAAGGC TCTTTACGCA TCCAAAATCT GCAGCTACGC ACAAGGCATG
    AACCTTATCC GTGCCAAGAG CATAGAAAAG GGGTGGGGAT TGAAGCTAGG
    TGAGTTAGCT AGAATCTGGA AAGGAGGCTG CATCATCAGA GCAATCTTCC
    TAGACAGGAT CAAGCAAGCT TATGACAGGA ACGCAGAGCT AGCTAACCTC
    TTGGTGGATC CAGAGTTTGC GAAAGAGATA ATCGAGAGAC AGTCCGCGTG
    GAGAAGAGTC GTCTGCTTAG CTATCAACTC GGGTATCAGC ACACCGGGTA
    TGTCTGCGAG TCTAGCCTAC TTTGATTCTT ACAGGAGAGA GAGATTGCCG
    GCAAATCTAG TCCAAGCACA GAGAGACTAC TTTGGTGCTC ATACATATGA
    AAGGACTGAT GTGGAAGGAT CTTTCCACAC CGAGTGGTTC AAGATTGCAA
    GACAATCTAA GATCTGAGAT CTCTCATCCT CTTGTATTCT TCTTCTCCTT
    CAATAATAAG TTCCACACAG TATGTTTCTT TCCTCAATGT GTGAGATACC
    TTGGCTTATT TATGATTGTA GAACTGAGTT TCTCGAAAAA AAAAA

    Gene models with high sequence identity

    1. AT3G02360.1 [+] show detail - 6-phosphogluconate dehydrogenase family protein
      E-value: 0; Score: 100.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMPanther 6-PHOSPHOGLUCONATE DEHYDROGENASE 2.7e-190
    Gene3D NAD(P)-binding domain 1.6e-54
    Gene3D Dehydrogenase, multihelical 1.1e-99
    Gene3D Fibritin/6-phosphogluconate dehydrogenase, C-terminal extension 1.2e-09
    HMMPfam 6-phosphogluconate dehydrogenase, C-terminal 1.2e-132
    HMMPfam 6-phosphogluconate dehydrogenase, NAD-binding 5.8e-48
    superfamily 6-phosphogluconate dehydrogenase, C-terminal-like 2.8e-121
    superfamily NAD(P)-binding domain 6e-54
    FPrintScan 6-phosphogluconate dehydrogenase 2.5e-81
    FPrintScan 6-phosphogluconate dehydrogenase 2.5e-81
    FPrintScan 6-phosphogluconate dehydrogenase 2.5e-81
    FPrintScan 6-phosphogluconate dehydrogenase 2.5e-81
    FPrintScan 6-phosphogluconate dehydrogenase 2.5e-81
    FPrintScan 6-phosphogluconate dehydrogenase 2.5e-81
    HMMTigr 6-phosphogluconate dehydrogenase, decarboxylating 1.3e-268

    See the detailed result >

    AT3G02360.1

    Model type
    Protein coding
    Short Description
    6-phosphogluconate dehydrogenase family protein
    Computational Description
    6-phosphogluconate dehydrogenase family protein; FUNCTIONS IN: in 6 functions; INVOLVED IN: response to salt stress; LOCATED IN: peroxisome; EXPRESSED IN: 27 plant structures; EXPRESSED DURING: 16 growth stages; CONTAINS InterPro DOMAIN/s: 6-phosphogluconate dehydrogenase, NAD-binding (InterPro:IPR006115), 6-phosphogluconate dehydrogenase, C-terminal-like (InterPro:IPR008927), Dehydrogenase, multihelical (InterPro:IPR013328), 6-phosphogluconate dehydrogenase, decarboxylating (InterPro:IPR006113), 6-phosphogluconate dehydrogenase, C-terminal (InterPro:IPR006114), 6-phosphogluconate dehydrogenase (InterPro:IPR006183), NAD(P)-binding domain (InterPro:IPR016040), Fibritin/6-phosphogluconate dehydrogenase, C-terminal extension (InterPro:IPR012284); BEST Arabidopsis thaliana protein match is: 6-phosphogluconate dehydrogenase family protein (TAIR:AT5G41670.2); Has 12208 Blast hits to 12120 proteins in 2600 species: Archae - 108; Bacteria - 8004; Metazoa - 655; Fungi - 226; Plants - 316; Viruses - 4; Other Eukaryotes - 2895 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR