F11703

RIKEN Arabidopsis full-length cDNA overexpressed Arabidopsis lines

Original: F11703

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage
Phenotypes
T2 seed (PO:0009010)
  • increased size (PATO:0000586)
    (Seed::Shape::large)
  • increased length (PATO:0000573)
    (Seed::Shape::long)

Invisible phenotypes

Original: F11703

Determination of introduced cDNA(s)

  • RAFL09-47-B20 - RIKEN Arabidopsis Full-length cDNAs - Original: RAFL09-47-B20 - Resource: pda06311

    full reading [+] show sequence

    Nucleotide sequence: RAFL09-47-B20 - full reading
    AAAAAAAAAA AAAAGAAAGT AAAAAACGCG TCAGGGAAGA GAAGATGGAT 
    CCGAATTCCA CGGTTTCCGG CGATGGTCAG GCGACGGCGG CGATAGAGCA
    TCGGTCCTTC GCTCGGATCG GATTTCTCGG AAACCCGAGC GATGTATACT
    TCGGGCGAAC CATATCATTG ACCATCGGAA ACTTCTGGGC ATCCGTGAAG
    CTGGAGCCAT CGGAGCATCT CGTAATCAAG CCTCATCCAT TCCATGATCT
    CGTCCAGTTC ACCTCTCTCG ACCATCTCCT GAATCGTTTG CAAAATGAAG
    GATACTACGG TGGGGTAAGG TTGCTAATGG CGATATGTAA AGTATTCCGT
    AACTATTGCA AAGAGAATGA CATTCAACTT CACCAAGCCA ACTTCTCTCT
    TTCTTATGAT ACCAATATCC CTAGGCAGAC AGGGCTTTCG GGTTCTAGTG
    CCATCGTATC CGCTGCCCTT AACTGCCTTC TCGACTTCTA CAATGTCAGG
    CATTTGATCA AAGTACAAGT CCGCCCTAAC ATTGTTCTCA GTGCTGAGAA
    AGAACTTGGC ATTGTTGCTG GTCTTCAGGA CAGGGTTGCT CAGGTCTATG
    GTGGTCTTGT TCACATGGAT TTTAGCAAGG AGCACATGGA TAAATTGGGG
    CATGGGATTT ACACTCCTAT GGATATCAGT CTCCTCCCTC CTCTGCATCT
    CATCTATGCT GAGAATCCGA GCGACTCAGG GAAGGTACAT AGTATGGTTC
    GGCAAAGATG GTTAGACGGT GATGAGTTTA TAATCTCATC AATGAAAGAA
    GTCGGAAGTC TAGCAGAAGA AGGTCGAACT GCATTACTCA ACAAGGACCA
    TTCCAAACTT GTGGAACTCA TGAACCTTAA TTTCGACATT CGGAGGCGGA
    TGTTTGGGGA TGAATGCTTA GGAGCAATGA ACATAGAGAT GGTGGAAGTA
    GCAAGGAGGG TTGGTGCAGC CTCAAAGTTC ACTGGAAGTG GAGGAGCAGT
    GGTGGTTTTC TGCCCTGAAG GTCCATCTCA GGTGAAACTT CTGGAAGAAG
    AATGCAGGAA AGCGGGATTT ACGCTTCAGC CGGTAAAAAT TGCGCCTTCA
    TGTTTGAATG ATTCTGACAT TCAGACCTTA TGAAAGCCTT GATCAAGTCT
    TCTTATTCAC ACGATAGAGC CATTTTCCAG AGAAATAAAC ATGTGAGCTT
    TAATTGGGTG GTTGTTCTGT TTCTTTTTCT TGCCCATTTT TGTTGTTTGT
    TCCTTGGCTT ATACTAATAT GTTTGTTTTG TTTCTTTTTC CACATTAAGG
    TCCAATTTTT TATATTATAT TAAAAGAACT AAAGAACAGA TGATCAAAAT
    TGAAGTAGTA ATGATATTTA TTTGCC

    Gene models with high sequence identity

    1. AT3G01640.1 [+] show detail - glucuronokinase G
      E-value: 0; Score: 100.00

     

    InterPro Scan Digest

    Program Description E-value
    superfamily Ribosomal protein S5 domain 2-type fold 9.5e-26
    superfamily GHMP Kinase, C-terminal domain 1.2e-18
    Gene3D Ribosomal protein S5 domain 2-type fold, subgroup 7e-07
    HMMPfam GHMP kinase 1.1e-08
    HMMPfam GHMP kinase, C-terminal 1.9e-05
    FPrintScan Mevalonate/galactokinase 9.4e-09
    FPrintScan Mevalonate/galactokinase 9.4e-09
    FPrintScan Mevalonate/galactokinase 9.4e-09
    FPrintScan Mevalonate/galactokinase 9.4e-09

    See the detailed result >

    AT3G01640.1

    Model type
    Protein coding
    Short Description
    glucuronokinase G
    Curator Summary
    AtGlcAK is a sugar kinase able to phosphorylate D-GlcA to D-GlcA-1-phosphate in the presence of ATP.
    Computational Description
    glucuronokinase G (GLCAK); FUNCTIONS IN: poly(U) RNA binding, glucuronokinase activity, ATP binding; INVOLVED IN: cell wall biogenesis, inositol metabolic process, pollen tube development; LOCATED IN: cytoplasm; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Mevalonate/galactokinase (InterPro:IPR006206), Ribosomal protein S5 domain 2-type fold (InterPro:IPR020568), GHMP kinase (InterPro:IPR006204), Ribosomal protein S5 domain 2-type fold, subgroup (InterPro:IPR014721), GHMP kinase, C-terminal (InterPro:IPR013750); BEST Arabidopsis thaliana protein match is: GHMP kinase family protein (TAIR:AT5G14470.1); Has 420 Blast hits to 420 proteins in 152 species: Archae - 38; Bacteria - 195; Metazoa - 13; Fungi - 2; Plants - 68; Viruses - 0; Other Eukaryotes - 104 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR