F11714

RIKEN Arabidopsis full-length cDNA overexpressed Arabidopsis lines

Original: F11714

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T2 seed (PO:0009010)
  • increased size (PATO:0000586)
    (Seed::Shape::large)
  • increased length (PATO:0000573)
    (Seed::Shape::long)

Invisible phenotypes

Original: F11714

Determination of introduced cDNA(s)

  • RAFL09-24-C12 - RIKEN Arabidopsis Full-length cDNAs - Original: RAFL09-24-C12 - Resource: pda08063

    full reading [+] show sequence

    Nucleotide sequence: RAFL09-24-C12 - full reading 
    GTCTCTTCTA TATAAAAATA ATCTCGATTT TTCAACTCCG ATCAAAGGTT 
    TTGCTAATTC GTCGCCTTAA TTTCGTTCAA GCTTCTACAA AAGTCCCAGA 
    TTTGTTCACC TTTTTCGGTA TTGAATCATG ATGAATTCAA TCTTCGGAAA 
    GCGAAAAACT CCCGCAGAAC TTCTGCGGGA GAACAAGCGG ATGCTGGATA 
    AGTCTATCAG AGAGATAGAG AGGGAGAGAC AAGGCCTACA AACACAAGAA 
    AAGAAACTCA TTAACGAGAT TAAAAAGACC GCAAAGCAAG GCCAAATGGG 
    AGCTGTTAAA GTGATGGCAA AGGATCTTAT AAGAACGCGG CACCAGATTG 
    AGAAGTTTTA CAAGCTTAAA TCTCAACTTC AAGGTGTATC TCTCAGGATC 
    CAGACTCTGA AATCTACACA AGCGATGGGT GAGGCGATGA AAGGTGTGAC 
    TAAAGCAATG GGGCAAATGA ACAGGCAGAT GAACCTTCCA TCTCTGCAGA 
    AAATCATGCA AGAATTTGAG AGGCAGAACG AGAAAATGGA GATGGTGTCT 
    GAGGTTATGG GAGATGCTAT TGATGATGCT TTGGAAGGAG ATGAGGAAGA 
    AGAAGAGACT GAAGATCTTG TTAGCCAAGT CCTTGACGAG ATCGGTATCG 
    ACATCAACCA AGAGCTGGTG AATGCTCCAT CTGGTGCGGT CGCAGTACCC 
    GCAGCAAAGA ACAAGGTGGT ACAAGCTGAG GCGACCGGAG CTGAGGACAG 
    TGGAGGTATA GATAGTGACC TTCAAGCAAG GTTGGATAAC CTTAGAAAAA 
    TGTGAAGCCT TTCCTGTTTC TGTATCATAA TATTACTGAG GCTGATCACT 
    TTTCAATTTC AAAGGCAAAT GTTGCAAACG ATGTGTTAAC GTTTTGGGGG 
    TGGGTTTGTA ATAAATTCAT AATTTGAGCC CTATATTATA AAACTGATTA 
    TTGTTCAAAC ACTTTGTATA TAAACCAATT TAAGGGTCTG AGAGATTTGA 
    CAAAAAAAAA AAAAAAA

    Gene models with high sequence identity

    1. AT2G06530.1 [+] show detail - SNF7 family protein
      E-value: 0; Score: 100.00

     

    InterPro Scan Digest

    Program Description E-value
    Coil coiled-coil 0
    Coil coiled-coil 0
    HMMPanther SNF7-LIKE PROTEIN (BC-2) (PUTATIVE BREAST ADE 5.8e-152
    HMMPanther SNF7-RELATED 5.8e-152
    HMMPfam Snf7 4.3e-47

    See the detailed result >

    AT2G06530.1

    Model type
    Protein coding
    Short Description
    SNF7 family protein
    Computational Description
    VPS2.1; CONTAINS InterPro DOMAIN/s: Snf7 (InterPro:IPR005024); BEST Arabidopsis thaliana protein match is: vacuolar protein sorting-associated protein 2.3 (TAIR:AT1G03950.1); Has 2524 Blast hits to 2516 proteins in 271 species: Archae - 17; Bacteria - 20; Metazoa - 1106; Fungi - 512; Plants - 555; Viruses - 5; Other Eukaryotes - 309 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR