F11714

RIKEN Arabidopsis full-length cDNA overexpressed Arabidopsis lines

Original: F11714

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage
Phenotypes
T2 seed (PO:0009010)
  • increased size (PATO:0000586)
    (Seed::Shape::large)
  • increased length (PATO:0000573)
    (Seed::Shape::long)

Invisible phenotypes

Original: F11714

Determination of introduced cDNA(s)

  • RAFL09-24-C12 - RIKEN Arabidopsis Full-length cDNAs - Original: RAFL09-24-C12 - Resource: pda08063

    full reading [+] show sequence

    Nucleotide sequence: RAFL09-24-C12 - full reading
    GTCTCTTCTA TATAAAAATA ATCTCGATTT TTCAACTCCG ATCAAAGGTT 
    TTGCTAATTC GTCGCCTTAA TTTCGTTCAA GCTTCTACAA AAGTCCCAGA
    TTTGTTCACC TTTTTCGGTA TTGAATCATG ATGAATTCAA TCTTCGGAAA
    GCGAAAAACT CCCGCAGAAC TTCTGCGGGA GAACAAGCGG ATGCTGGATA
    AGTCTATCAG AGAGATAGAG AGGGAGAGAC AAGGCCTACA AACACAAGAA
    AAGAAACTCA TTAACGAGAT TAAAAAGACC GCAAAGCAAG GCCAAATGGG
    AGCTGTTAAA GTGATGGCAA AGGATCTTAT AAGAACGCGG CACCAGATTG
    AGAAGTTTTA CAAGCTTAAA TCTCAACTTC AAGGTGTATC TCTCAGGATC
    CAGACTCTGA AATCTACACA AGCGATGGGT GAGGCGATGA AAGGTGTGAC
    TAAAGCAATG GGGCAAATGA ACAGGCAGAT GAACCTTCCA TCTCTGCAGA
    AAATCATGCA AGAATTTGAG AGGCAGAACG AGAAAATGGA GATGGTGTCT
    GAGGTTATGG GAGATGCTAT TGATGATGCT TTGGAAGGAG ATGAGGAAGA
    AGAAGAGACT GAAGATCTTG TTAGCCAAGT CCTTGACGAG ATCGGTATCG
    ACATCAACCA AGAGCTGGTG AATGCTCCAT CTGGTGCGGT CGCAGTACCC
    GCAGCAAAGA ACAAGGTGGT ACAAGCTGAG GCGACCGGAG CTGAGGACAG
    TGGAGGTATA GATAGTGACC TTCAAGCAAG GTTGGATAAC CTTAGAAAAA
    TGTGAAGCCT TTCCTGTTTC TGTATCATAA TATTACTGAG GCTGATCACT
    TTTCAATTTC AAAGGCAAAT GTTGCAAACG ATGTGTTAAC GTTTTGGGGG
    TGGGTTTGTA ATAAATTCAT AATTTGAGCC CTATATTATA AAACTGATTA
    TTGTTCAAAC ACTTTGTATA TAAACCAATT TAAGGGTCTG AGAGATTTGA
    CAAAAAAAAA AAAAAAA

    Gene models with high sequence identity

    1. AT2G06530.1 [+] show detail - SNF7 family protein
      E-value: 0; Score: 100.00

     

    InterPro Scan Digest

    Program Description E-value
    Coil coiled-coil 0
    Coil coiled-coil 0
    HMMPanther SNF7-LIKE PROTEIN (BC-2) (PUTATIVE BREAST ADE 5.8e-152
    HMMPanther SNF7-RELATED 5.8e-152
    HMMPfam Snf7 4.3e-47

    See the detailed result >

    AT2G06530.1

    Model type
    Protein coding
    Short Description
    SNF7 family protein
    Computational Description
    VPS2.1; CONTAINS InterPro DOMAIN/s: Snf7 (InterPro:IPR005024); BEST Arabidopsis thaliana protein match is: vacuolar protein sorting-associated protein 2.3 (TAIR:AT1G03950.1); Has 2524 Blast hits to 2516 proteins in 271 species: Archae - 17; Bacteria - 20; Metazoa - 1106; Fungi - 512; Plants - 555; Viruses - 5; Other Eukaryotes - 309 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR