F11725

RIKEN Arabidopsis full-length cDNA overexpressed Arabidopsis lines

Phenotypes

Morphological phenotypes

Generation	Anatomical entity /structure development stage	Phenotypes
T1
	cauline leaf (PO:0000013)	increased size (PATO:0000586) (Cauline leaf::Shape::large) abnormal (PATO:0000460) (Cauline leaf::Others)
	rosette leaf (PO:0000014)	increased size (PATO:0000586) (Rosette leaf::Shape::large) present in greater numbers in organism (PATO:0000470) (Rosette leaf::Number::many)
	root (PO:0009005)	present in greater numbers in organism (PATO:0000470) (Root::Number::many)
	stem (PO:0009047)	increased thickness (PATO:0000591) (Stem::Shape::thick) abnormal (PATO:0000460) (Stem::Others) abnormal (PATO:0000460) (Stem::Others)
	stem internode (PO:0020142)	decreased length (PATO:0000574) (Stem::Shape::short internode)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: F11725

Determination of introduced cDNA(s)

RAFL16-95-M21 - RIKEN Arabidopsis Full-length cDNAs - Original: RAFL16-95-M21 - Resource: pda10407

full reading [+] show sequence

ATCTGCAGGA GTGAATCGCA AAACCAAATT TGGAGGATTC TTTCTGAGGG 
GTTTCTCAGT GAGAAAATGG CTTCGAAACG GATCTTGAAG GAGCTGAAGG 
ATCTCCAGAA AGACCCTCCA ACCTCCTGCA GTGCAGGTCC AGTTGCTGAA 
GACATGTTTC ATTGGCAAGC TACAATTATG GGTCCTGCAG AGAGTCCGTA 
TTCAGGCGGT GTGTTTCTCG TTACCATTCA CTTCCCTCCG GACTATCCAT 
TCAAACCACC AAAGGTTGCA TTTAGGACGA AGGTGTTTCA CCCTAATATC 
AACAGCAACG GAAGCATTTG CCTTGACATT TTGAAAGAAC AATGGAGCCC 
TGCCCTCACC ATTTCCAAGG TGTTGCTCTC GATATGTTCG CTGTTAACAG 
ATCCAAATCC AGATGACCCT TTGGTACCAG AGATTGCACA CATGTACAAA 
ACCGACAGAG CCAAATACGA GGCTACTGCA AGAAACTGGA CTCAGAAGTA 
TGCCATGGGC TAAACAAAGA TTCGTATGCT TCAGCACCTG TTTATGTTTT 
CATGTCTGTT TCTTTCTTCT TCTTGTTTTA ACTTTAATAA AAATGTCTAA 
AATATCAACT TTTTCGTCTG TACTATATAT GTTTATGGGT TTTATTATCA 
TCATCTTTAT CTGAAATTTG AAGATGGAAT TCTAAAGCTT GAAGGTTATT 
TGTTAAAGTT TATTTACTAG TGAGTGATGA GAAACATTGT GTTGTTGTTC 
ATTTCATTTT TTCTTTGTCA GGAATATTCA TTGACTTGTT TTCTTTAAAA 
AAAAAAAAAA AAAAAAATGA GGTTCTCGAG AACCGCTCAC ACAAAAACGT 
TTTCGAAATC CCTAATCTAC TCTCTCTTCT CTATATCTCT ACTCTTGAGA 
AATGGCTCTT AGAACTGTGC TCGTCTCCGA CGTCCCTAGC CTCCCGGATT 
CTGTCTACGG TTTATCCGAA GGTTTAGAGT TGAGCAAACC GACGTCGTTT 
AGGTTACCGG GGTTTTCGGT GATTGGACAT AGAGGAATCG GTATGAATGT 
GTTGCAATCG TCTGATCGGA GAGCGAGAGG TGTTAAAGAA AACTCGATTC 
TTTCATTCAA TTCCGCCGCT AAGTATCCGA TTGATTTCAT TGAGTTCGAT 
GTTCAGGTGA CAAAAGATGA TTGCCCTGTC ATTTTCCATG ATGATTTCAT 
CTACTCTGAA GAAAATGGTA TTGTTAATGA GAGTAGAGTG ACGGATCTGA 
GTCTGTCTGA GTTTCTCCTT TATGGACCTC AGAAGGAAAC TGAGAAAATA 
GGGAAGACAC TGATGAGGAA ATCTAAAGAA GGGAAGGTTT TGAAATGGGA 
CGTTGATTTG GATGATTCTC TTTGTACGTT GCAAGAAGCT TTTGAACAAG 
TTGAACAAAC TCTTGGGTTC AATATCGAGT TGAAATTTGA TGATCAGACC 
GTCTATGAAC GAGAGTTTCT TGTCCATATC CTGAGATCAG TACTACAGGT 
GGTCTCTAAT TATGCTAAAG ACAGACCAGT AATCTTCTCA AGTTTCCAAC 
CAGATGCAGC TAAGCTTGTT AGGGAACTGC AGAGCACTTA CCCTGTTTTC 
TTTCTGACTG ATGCGGGAAA CGAGATTCAC AATGACGAGA GAAGAAACTC 
GCTCGAAGAA GCCATTCAAG TTTGCTTGGA AGGAGGTCTT CAAGGTATTG 
TTTCAGAGGT AAAAGGAGTG TTCAGGAACC CAGCAGCCAT TAGCAAGATC 
AAAGAATCTA ACCTCTCTCT CCTCACATAC GGCAAACTCA ACAATGTCGG 
AGAGGCAGTG TACATGCAAT ATGTGATGGG GATCGATGGA GTGATTGTAG 
ATTTTGTTGA GGAGATTATA GAGTCCACGA CACGCATGAT GATAAGACCA 
CCACCATCAT CATCACCATT ACCATCACCT TCCAAGGATG ATGATGTTGC 
CATTACAAGA CCTGAGTTTT CACAGAAGGA GATTTCTTTT CTTCTCAAGC 
TTCTCTCTCA GTTGATACAA CATTGATATC TCTGTTTTTT CGTTTTCTTT 
TATCCCAAGT TTCTTTTTAG GGTTTGATTT TCTTATTGAT TTAATTATTA 
TTCTGGGTGT ATTACCCAAT AGTTGGAATT GTAAATAATT ATAAATTTAT 
TTCTTTT

Gene models with high sequence identity

AT5G41080.1 [+] show detail - PLC-like phosphodiesterases superfamily protein
E-value: 0; Score: 100.00

InterPro Scan Digest

Program	Description	E-value
HMMSmart	Ubiquitin-conjugating enzyme, E2	4.7e-80
HMMPanther	RELATED TO MULTIFUNCTIONAL CYCLIN-DEPENDENT K	5.7e-84
HMMPanther	UBIQUITIN-CONJUGATING ENZYME E2	6e-109
HMMPanther	UBIQUITIN-CONJUGATING ENZYME E2	6e-109
Gene3D	Ubiquitin-conjugating enzyme/RWD-like	6.6e-61
Gene3D	PLC-like phosphodiesterase, TIM beta/alpha-barrel domain	1.1e-35
PatternScan	Ubiquitin-conjugating enzyme, E2	0
Coil	coiled-coil	0
superfamily	Ubiquitin-conjugating enzyme/RWD-like	5.1e-68
superfamily	PLC-like phosphodiesterase, TIM beta/alpha-barrel domain	2.2e-39
ProfileScan	Ubiquitin-conjugating enzyme, E2	48.492
HMMPfam	Ubiquitin-conjugating enzyme, E2	2.1e-52
HMMPfam	Glycerophosphoryl diester phosphodiesterase	1.7e-53

See the detailed result >

AT5G41080.1

Model type: Protein coding
Short Description: PLC-like phosphodiesterases superfamily protein
Computational Description: PLC-like phosphodiesterases superfamily protein; FUNCTIONS IN: phosphoric diester hydrolase activity, glycerophosphodiester phosphodiesterase activity; INVOLVED IN: glycerol metabolic process, lipid metabolic process; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: PLC-like phosphodiesterase, TIM beta/alpha-barrel domain (InterPro:IPR017946), Glycerophosphoryl diester phosphodiesterase (InterPro:IPR004129); BEST Arabidopsis thaliana protein match is: senescence-related gene 3 (TAIR:AT3G02040.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Link: InterPro Scan - TAIR