F11726

RIKEN Arabidopsis full-length cDNA overexpressed Arabidopsis lines

Original: F11726

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T1  
whole plant (PO:0000003)
  • decreased height (PATO:0000569)
    (Adult plant::Plant height::short)
cauline leaf (PO:0000013)
  • present in fewer numbers in organism (PATO:0001997)
    (Cauline leaf::Number::few)
rosette leaf (PO:0000014)
  • desaturated green (PATO:0001272)
    (Rosette leaf::Color::pale)
  • decreased size (PATO:0000587)
    (Rosette leaf::Shape::small)
  • increased width (PATO:0000600)
    (Rosette leaf::Shape::wide)
stem (PO:0009047)
  • decreased thickness (PATO:0000592)
    (Stem::Shape::thin)
  • abnormal (PATO:0000460)
    (Stem::Others)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: F11726

Determination of introduced cDNA(s)

  • RAFL06-67-P17 - RIKEN Arabidopsis Full-length cDNAs - Original: RAFL06-67-P17 - Resource: pda03285

    full reading [+] show sequence

    Nucleotide sequence: RAFL06-67-P17 - full reading 
    CTTCGAAACT CCATCATCAT CCTCACCGCA GAAAATCCCC AATACGTTGC 
    TTCTGTCTCT TAATCATAAC CATGTCCTCC ATTCTCATCC TTCTCTTCTC 
    TCTCTTCCTC TTCTCCTCTC CCTCCTCCTC CTCCCGTCAC CACCACCACC 
    ACAATTCCGG CGACACTTCT CCGGTCAATC CTTCGTCGTC TCTCGCCGCT 
    CAGATCCGTC TCGCTTGTAA CGCAACTCGT TACCCAGACC AATGCGTCTC 
    TTCCCTATCC GAACAGGGTC GGGTTCCTCC GGATCCTAAA CCAATCCAGA 
    TCATTCACTC AGCGATCTCA TTCTCATTCC AAAACCTCAA AACCGCCCAA 
    TCAAAAATCA AGTCTATTGT AGACTCGTCC GTAGGGAATC TAAACCGTAC 
    AAACGCCGCG AACACGTGTC TCCAGCTTCT CACTTACTCC GAGCACCGCA 
    CTCAATCGAC GGATCAAGCT TTAACACGTG GCAAAATCAA AGACGCTCGA 
    GCTTGGATGA GCGCTGCTCT AGTGTACCAG TACGATTCAT GGTCAGCGCT 
    CAAGTACGTC AACGACACGA GCCAAGTAGG TGAAACGATG TCGTTTCTCG 
    ACGGACTTAT CCACGTCACC AGCAACGCGC TTAGCATGAT GGTATCGTAC 
    GATAACTTCG GAGACAACGT CGCGTCGTGG ACTTACCCAG CAACGGAACG 
    TGACGGGTTT TGGGAAAAGA CTGGGCCTGG TTTGGGCTTA GATCCGAGTA 
    CAGGGCTTAA TTTGGGTTTT CCTTCCGGTT TAAAAGAAGA CGTGACGGTG 
    TGTAAAGACG GAAAATGCGG TTACAAGACG GTGCAAGACG CCGTTAACGC 
    TGCGCCGGAG GATAACGGAA TGCGTAAGTT CGTTATAAAG ATTAGCGAAG 
    GAGTCTACGA GGAGAACGTT ATTGTTCCGT TTGAGAAGAA GAACGTTGTG 
    TTTATCGGTG ACGGTATGGG CAAAACGGTC ATTACAGGTT CGTTAAACGC 
    CGGTATGCCT GGGATCACTA CGTACAATAC TGCAACTGTC GGAGTGGTAG 
    GAGATGGATT CATGGCTCGT GATCTAACGT TCCAGAACAC GGCGGGACCA 
    GACGCTCACC AAGCGGTGGC GTTTAGATCC GACAGCGATT TTTCTCTGAT 
    CGAGAATTGC GAGTTCCTTG GGAACCAAGA CACTCTCTAT GCCCATGGTC 
    TTCGTCAGTT CTACAAAAAC TGTCGTATCC AAGGAAATGT TGACTTTATC 
    TTTGGGAATT CAGCTGCTGT CTTCCAAGAC TGTGAAATCC TAATCGCACC 
    GCGTCAAATT AACCCTGAAA AGGGCGAGAA AAACGCAGTC ACTGCCCAAG 
    GAAGGATTGA CCCGTCCCAG TCCACGGGTT TCGTGTTCTT GAACTGTTTG 
    ATTAACGGAA CAGAGGAGTA CATGAAGCTG TTTAAAGCTA ACCCTAAGGT 
    GCATAAGAAC TTCTTGGGGA GGCCATGGAA AGATTACTCA AGGACTGTGT 
    TTATAGGTTG TAATTTAGAG GCTTTGATTA CTCCTGATGG ATGGTTACCT 
    TGGAGCGGGG ATTTCGCGCT CAAGACACTT TATTACGGTG AATCTAAGAA 
    CACGGGTCCG GGATCAGATA GGTCACAAAG GGTTTCATGG AGCAGTCAGA 
    TACCGGACGA GCATGTTCAT GTGTATTCGG TGGCTAACTT TATTCAGGCT 
    GATGAGTGGG CTTCGATGTC TGCTTAAATC AATCTTTAAG ACTATAAGGG 
    GTTTAGGAAT GTTTTAAAAG AAGAAAACCA TCTCATTGTA ATTTAGTTGA 
    TAAACTGTTT TAAACATAAA AGCAAACATT GCATTCATGT TATATCAATT 
    GAGAGTTCAT AGTCTTAGGA CTAATTGAAG TAAAACAATA AAGTTTCAAA 
    ACTTGGAAAA AAAAAAAAAA AA

    Gene models with high sequence identity

    1. AT5G09760.1 [+] show detail - Plant invertase/pectin methylesterase inhibitor superfamily
      E-value: 0; Score: 100.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMSmart Pectinesterase inhibitor 7.8e-27
    HMMTigr Pectinesterase inhibitor 2.4e-06
    HMMPfam Pectinesterase, catalytic 4.4e-126
    HMMPfam Pectinesterase inhibitor 1.4e-19
    superfamily Pectin lyase fold/virulence factor 3.7e-98
    superfamily Pectinesterase inhibitor 4.2e-12
    Gene3D Pectinesterase inhibitor 0.0005
    Gene3D Pectin lyase fold 1.5e-106

    See the detailed result >

    AT5G09760.1

    Model type
    Protein coding
    Short Description
    Plant invertase/pectin methylesterase inhibitor superfamily
    Computational Description
    Plant invertase/pectin methylesterase inhibitor superfamily; FUNCTIONS IN: enzyme inhibitor activity, pectinesterase activity; INVOLVED IN: cell wall modification; LOCATED IN: cell wall, chloroplast, plant-type cell wall; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Pectin lyase fold/virulence factor (InterPro:IPR011050), Pectinesterase, catalytic (InterPro:IPR000070), Pectinesterase inhibitor (InterPro:IPR006501), Pectin lyase fold (InterPro:IPR012334); BEST Arabidopsis thaliana protein match is: Plant invertase/pectin methylesterase inhibitor superfamily (TAIR:AT5G64640.1); Has 2807 Blast hits to 2761 proteins in 473 species: Archae - 6; Bacteria - 874; Metazoa - 1; Fungi - 174; Plants - 1725; Viruses - 0; Other Eukaryotes - 27 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR