F11727

RIKEN Arabidopsis full-length cDNA overexpressed Arabidopsis lines

Phenotypes

Morphological phenotypes

Generation	Anatomical entity /structure development stage	Phenotypes
T2	seed (PO:0009010)	increased length (PATO:0000573) (Seed::Shape::long) decreased width (PATO:0000599) (Seed::Shape::narrow)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: F11727

Determination of introduced cDNA(s)

RAFL19-55-A05 - RIKEN Arabidopsis Full-length cDNAs - Original: RAFL19-55-A05 - Resource: pda11273

full reading [+] show sequence

AGAAACCCTT GGAGTCTTGG ACTGCTCTGC GAGAGAACAT ATCAACCTTC 
TACACTCTTC CAAAATCGCC ATCTTTATCT AAAGCTCCCC GAAATGTCAG 
AACAGTATTC CGAAGATGCT AAACATATCG AGAAGCTTTA TGAGTTCGAC 
GAGCGCTTGA GCGAGTCCAC GGACAAGTCT CAGAATGTTC AAGACTATGA 
AGGGATTATT GAGTTGTCTA AGACGAACAT CAAGACAAAG CAGCTTGGAG 
CTCAACTGAT TCCACGCTAC TTCAAGTTCT TCACAAGTCT CGCAACAGAA 
GCTTTTGATG CGTACTTGGA TATATTCGAC GAAGTTGAAG TCGGGGTACG 
AGTTCAAGCC ATCCGCGGGC TTCCATTGTT CTGCAAGGAT ACTCCTGATT 
TTATATCTAA GATAATTGAT GTTCTTGTAC AATGTCTAAA TACTGAGGAA 
TTTGTGGAGC GTGATGCTGT GCACAAGGCT CTTATGTCAT TATTTCGGCA 
AGATACTAAG GCATCTTTGA CTGCATTGTT TAAGCACACT GAGGCCACTC 
TTAGTACTGA TGAGCAAATC CGTGAAAAGG TCTTACACTT TATTAGAGAT 
AAGGTGTTCC CTCTTAAAGG GGAACTGTTA AAGCCTCAAC AGGAAATGGA 
AAGACATATA ACCGATTTAA TCAAAAAGAG CCTAGGGGAT GTAACTGGAG 
AAGAGTTCAA TATGTTTATG GATTTCCTGA AAAGTTTGAG TATATTTGGA 
GGGAAAGCTC CTCAAGAAAG AATGCAAGAA CTTGTAGAAA TTATTGAAGG 
ACAGGCTGAT TTGGATTCAG AGTTTAATGT TTCAGATACA GATCATATTG 
ACAGGTTTAT ATCATGCCTG CAAACGGCCC TTCCATTCTT TGCAAGAGGT 
GCTCCAGGTA GCAAGTTTCT TAACTACTTG AACAAGAATA TCATGCCTGC 
TTTTGACCAG CTGCCAGAGG AGAGGAAGCT TAATTTACTC AGAGCTCTTG 
CTGAGATGTC CCCATACACA ACAGCTCAGG TAGCACGTCA GATACTTCCA 
TCAATAGTTC AGCTCTTAAA GAAGTACATG CCTGCTAGGA AAACTGGGGA 
AGAAATGAAC TTCACATATG TCGAGTGCCT GTTATACGTG CTACATCATT 
TGGCGCACAA GGCTCCAAAT GCAACAAACA GCTTGTGCGG CTACAAGATA 
GTGACTGGGC AGCCATCAGA TAGACTCGGG GAGGACTTCT CAGAGTTCAA 
CAAGGAATTC ACTGAGAGAT TGACCAGTGT TGAGGATCTA ACGAAGGCAA 
CAATGAAAAA ACTTACTCAA GGAATGTCTG AGCACAGCAA AGCCATGTCG 
ACTGCTAAGA CAGATGAAGA GAAGTCAATC GTGAAAACGA AGAAGCAGAG 
TACAACAACT GGACTCAGGA CCTGCAATAA CATATTGGCA ATGACAAAGG 
GATTGCATGC AAAAGCGCCT TCATTTATCG GAAACACCAG TGTTACTCTT 
TCTTGGAAAG AACCCACGAA AGTGACGAAA CCGTTAGCCT CTACAACGAC 
TGGAGGAAAA CGGCCTGCAA ATGGAGCCGG TAATAACGTG GGTGCAAAAA 
AGGCTCGTGT GCAGAATCAA CAACAGGTTG TGAACAAAAG ATCTGAGGGA 
ATCTCACACG GTGGTGGTAG AGGCAGTCAC AGAGGCCGAG GCCGGGGCCA 
AGGTCAGGGA AGACACAGTG GTGGTGGTGG CGGCCGTGGC CGTGGAAGAA 
GAGGCTTCTG GTAATTTCAA AGGATTCTCC ATGACACTCT TTTTTGTCTG 
TTCTTGTATA ACAGAGTATG TTTATCCTTC TTGTTTTGGC TCTTTTAGGC 
TCCTAACATT CGACAAACAA ATTAATCTCT TTTGCGATTT CTTTGGCTTC 
TCCTTTATAT GAC

Gene models with high sequence identity

AT1G29030.1 [+] show detail - Apoptosis inhibitory protein 5 (API5)
E-value: 0; Score: 100.00

InterPro Scan Digest

Program	Description	E-value
HMMPanther	Apoptosis inhibitory 5	1.7e-204
HMMPanther	APOPTOSIS INHIBITOR 5-RELATED	1.7e-204
superfamily	Armadillo-type fold	8.2e-16
HMMPfam	Apoptosis inhibitory 5	0

See the detailed result >

AT1G29030.1

Model type: Protein coding
Short Description: Apoptosis inhibitory protein 5 (API5)
Computational Description: Apoptosis inhibitory protein 5 (API5); FUNCTIONS IN: binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Apoptosis inhibitory 5 (InterPro:IPR008383), Armadillo-type fold (InterPro:IPR016024); BEST Arabidopsis thaliana protein match is: Apoptosis inhibitory protein 5 (API5) (TAIR:AT2G34040.1); Has 834 Blast hits to 647 proteins in 164 species: Archae - 2; Bacteria - 50; Metazoa - 244; Fungi - 88; Plants - 132; Viruses - 7; Other Eukaryotes - 311 (source: NCBI BLink).
Link: InterPro Scan - TAIR