F11730

RIKEN Arabidopsis full-length cDNA overexpressed Arabidopsis lines

Original: F11730

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T2 seed (PO:0009010)
  • increased size (PATO:0000586)
    (Seed::Shape::large)
  • increased length (PATO:0000573)
    (Seed::Shape::long)

Invisible phenotypes

Original: F11730

Determination of introduced cDNA(s)

  • RAFL05-12-F16 - RIKEN Arabidopsis Full-length cDNAs - Original: RAFL05-12-F16 - Resource: pda12226

    full reading [+] show sequence

    Nucleotide sequence: RAFL05-12-F16 - full reading 
    GTCTTGGCAT CCTCGTCCTC TTCAGCAAAA CTCGTCTCTC TTGCACTCCA 
    AAAAGCAACC ATGTCTGCTT TTGTCGGCAA ATACGCAGAT GAGCTGATAA 
    AGACGGCTAA GTACATTGCC ACACCGGGAA AGGGCATTTT GGCAGCAGAC 
    GAGAGCACGG GAACTATTGG GAAACGATTC GCCAGCATCA ATGTTGAGAA 
    CATTGAGTCC AACCGCCAAG CTCTCCGTGA GCTCCTCTTC ACGTCCCCTG 
    GCACTTTCCC TTGCCTCTCC GGTGTTATCC TCTTCGAGGA AACCCTCTAC 
    CAGAAAACCA CGGATGGCAA ACCCTTCGTT GAGCTCCTCA TGGAAAACGG 
    AGTTATCCCT GGAATCAAAG TGGACAAGGG TGTGGTTGAT CTAGCAGGAA 
    CCAATGGCGA GACCACTACT CAGGGTCTAG ATTCACTTGG TGCACGTTGC 
    CAGGAGTATT ACAAGGCAGG AGCTCGGTTT GCAAAATGGC GTGCAGTCCT 
    CAAGATTGGG GCCACCGAGC CAAGCGAGCT CTCTATCCAA GAGAACGCCA 
    AGGGGCTAGC CCGCTATGCC ATCATCTGCC AGGAGAATGG ACTCGTCCCA 
    ATCGTCGAGC CAGAGGTACT GACCGACGGG AGCCATGACA TCAAGAAATG 
    TGCAGCGGTG ACCGAGACCG TTCTTGCTGC CGTGTACAAG GCCTTGAACG 
    ACCACCATGT CCTCCTCGAA GGCACTCTGC TTAAACCGAA CATGGTCACT 
    CCCGGCTCTG ACAGCCCAAA GGTTGCACCG GAAGTGATAG CGGAATACAC 
    AGTGACTGCT CTGCGCCGCA CAGTCCCACC TGCAGTTCCA GGAATCGTGT 
    TCCTCTCAGG CGGACAGAGT GAAGAGGAAG CAACACTAAA TCTGAACGCA 
    ATGAACAAGC TCGATGTGTT GAAGCCATGG ACTCTCACTT TCTCATTTGG 
    CCGAGCCCTC CAACAAAGCA CTCTCAAGGC TTGGGCAGGT AAGACAGAGA 
    ATGTAGCCAA AGCTCAGGCC ACTTTCCTGA CCAGGTGCAA GGGTAACTCG 
    GACGCTACCC TCGGGAAATA CACCGGCGGG GCTTCTGGTG ACTCGGCCGC 
    CTCTGAGAGC TTGTATGAGG AAGGATACAA GTATTAGGAG CGTTTAAATA 
    CGGGTGTCGC CTTTTATACG ATTTGAATAT ATGTCAAATG TTTCGTAGGC 
    GTTTAACTGT TTAAATTTTT ATCGATTTGG TTTAGCGTCT GTGTAATGTT 
    CTTAAACTGT GTTGTGTTTT TTGTGATGGT TTCTATAATA TTTTCGCGCC 
    AT

    Gene models with high sequence identity

    1. AT4G26530.2 [+] show detail - Aldolase superfamily protein
      E-value: 0; Score: 100.00

     

    InterPro Scan Digest

    Program Description E-value
    Gene3D Aldolase-type TIM barrel 3e-151
    superfamily Aldolase 1.9e-165
    HMMPanther Fructose-bisphosphate aldolase, class-I 4.5e-275
    HMMPfam Fructose-bisphosphate aldolase, class-I 5e-175
    PatternScan Fructose-bisphosphate aldolase, class-I 0

    See the detailed result >

    AT4G26530.2

    Model type
    Protein coding
    Short Description
    Aldolase superfamily protein
    Computational Description
    Aldolase superfamily protein; FUNCTIONS IN: fructose-bisphosphate aldolase activity; INVOLVED IN: glycolysis, metabolic process; EXPRESSED IN: 17 plant structures; EXPRESSED DURING: 11 growth stages; CONTAINS InterPro DOMAIN/s: Aldolase-type TIM barrel (InterPro:IPR013785), Fructose-bisphosphate aldolase, class-I (InterPro:IPR000741); BEST Arabidopsis thaliana protein match is: Aldolase superfamily protein (TAIR:AT4G26520.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR