F11738

RIKEN Arabidopsis full-length cDNA overexpressed Arabidopsis lines

Original: F11738

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage
Phenotypes
T2 seed (PO:0009010)
  • increased size (PATO:0000586)
    (Seed::Shape::large)
  • increased length (PATO:0000573)
    (Seed::Shape::long)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: F11738

Determination of introduced cDNA(s)

  • RAFL07-15-D24 - RIKEN Arabidopsis Full-length cDNAs - Original: RAFL07-15-D24 - Resource: pda04293

    full reading [+] show sequence

    Nucleotide sequence: RAFL07-15-D24 - full reading
    GGTAGTATCA GACAGATCGA AAATCGCAAC GGTTAAGATT CCAGCTACTG 
    AAATCTATCA ACGTCGAAGA AGTGAACGAT GGGGAAGAAA CAACACAGCA
    AAGATCGGAT GTTCATAACG AAGACGGAGT GGGCAACAGA ATGGGGAGGC
    GCTAAATCCA AAGAGAATCG AACTCCTTTC AAGAGTCTTC CTTACTATTG
    CTGCGCGCTT ACGTTTTTGC CATTCGAAGA TCCTGTGTGT ACAATCGACG
    GGAGTGTTTT CGAGATAACA ACAATAGTGC CTTACATTAG GAAATTTGGA
    AAACATCATG TTACTGGAGC TCCATTGAAA GGAGAAGATC TAATTCCTCT
    CATCTTTCAC AAGAACTCTG AAGGAGAGTA TCATTGTCCT GTTCTAAACA
    AAGTCTTCAC TGAATTTACA CATATTGTTG CTGTCAAGAC TACTGGAAAT
    GTATTCTGCT ACGAGGCAAT CAAAGAGTTG AATATCAAAA CCAAGAATTG
    GAAGGAGCTT TTAACTGAAG AACCATTTAC AAGAGCCGAC CTTATAACAA
    TTCAGAATCC TAATGCAGTT GATGGTAAAG TGACGGTGGA GTTTGATCAT
    GTTAAAAACG GTCTTAAGAT CGATGATGAA GAGTTGAAAA AGATGAACTC
    AGACCCTGCT TATAATATAA ACGTGTCTGG AGATATCAAG CACATGCTTG
    CAGATCTTGG AACTGATAAA GCTAAAGAGA TTGCTTTACA TGGTGGAGGT
    GGAAACAAGG CACGTAATGA AAGAGCCGCT GCTATTGCTG CGATTCTGGA
    GTCAAGATCG AAAATCAAAG AGGTTTCTAA AGCAGAACAA CCGAAACAGA
    CCTACAGTGT TGTTGATGCT GCATCTGCTT CGGTTTTTGG AAGAAGTGCT
    GATGCAGCTA AAGCTGGTTC TAGTGATAAA ACAGCTGCAA GAATAGCTAT
    GCATATGGCT GGAGATAGAA CACCTGTTAA TTCTAAAATG GTGAAGAGCC
    GTTATTCGTC GGGTGCTGCT TCTCGTTCTT TCACTTCCTC TGCCTTTACT
    CCTGTAACCA AAAACGATTT TGAACTAATT AAAGTCGAGA AAAACCCGAA
    AAAGAAAGGG TATGTTCAGT TTCAGACAAC ACATGGCGAT TTGAACATTG
    AGCTCCATTG CGATATAGCT CCTAGAGCAT GTGAGAATTT CATCACTCTC
    TGTGAACGTG GTTACTACAA TGGAGTGGCC TTTCACAGAA GTATCAGGAA
    CTTCATGATT CAAGGGGGCG ATCCAACTGG CACAGGAAAA GGAGGTGAAT
    CCATTTGGGG GAAGCCATTC AAAGACGAGC CAAACTCGAA GCTGCTTCAC
    TCAGGAAGAG GCGTAGTTAG TATGGCTAAT AGTGGACCTC ACACAAATGG
    TTCTCAGTTT TTCGTCTTAT ACAAATCAGC GACCCATTTA AACTACAAGC
    ACACAGTGTT TGGTGGAGTT GTTGGTGGTT TGGCAACACT AGCAGCAATG
    GAGAATGTAC CTGTAGATGA AAGCGACCGT CCTCTTGAAG AGATTAAGAT
    AATCGAGGCA AGTGTGTTTG TGAATCCATA CACGGAGCTT GATGAAGAGG
    AAGAGAAAGA GAAAGCTGAG AAAGAGAAGA ATGAAGACAA AGACATTGAG
    AAGATCGGGT CGTGGTACAG CAACCCGGGA TCAGGAACAA CAGAAGCTGG
    AGCGGGTGGC GGTGGTGTCG GAAAATACTT GAAAGCTATG AGTAGTACAG
    CCACTAAAGA CACTAAAGGT TCCCTAGACT CAGATATTTC AACCATTGGA
    GTGTCTAAGA AAAGAAAAAC TACTGCGTCA GCCTCCACAG GGTTTAAAGA
    TTTCTCTAGC TGGTAATTGA AAACATTCTC TACCTACTTT GTAAAACCGT
    TGACTAGTTT TGATAGAGAC CAAGTCACAA AAGCATTTGT ATGACAACAC
    TGAGCCTTTG ATGTCCAAAA TCTGGAGCTG TGTAATAAAG TTGACTAGTT
    TTGATGG

    Gene models with high sequence identity

    1. AT5G67530.1 [+] show detail - plant U-box 49
      E-value: 0; Score: 99.95

     

    InterPro Scan Digest

    Program Description E-value
    FPrintScan Peptidyl-prolyl cis-trans isomerase, cyclophilin-type 4.1e-23
    FPrintScan Peptidyl-prolyl cis-trans isomerase, cyclophilin-type 4.1e-23
    FPrintScan Peptidyl-prolyl cis-trans isomerase, cyclophilin-type 4.1e-23
    FPrintScan Peptidyl-prolyl cis-trans isomerase, cyclophilin-type 4.1e-23
    FPrintScan Peptidyl-prolyl cis-trans isomerase, cyclophilin-type 4.1e-23
    superfamily Cyclophilin-like 7.5e-61
    superfamily RING/U-box 2.8e-12
    superfamily RING/U-box 0.0025
    HMMPfam Peptidyl-prolyl cis-trans isomerase, cyclophilin-type 7e-46
    HMMPanther CYCLOPHILIN-10 4.6e-129
    HMMPanther CYCLOPHILIN 4.6e-129
    PatternScan Peptidyl-prolyl cis-trans isomerase, cyclophilin-type, conserved site 0
    Gene3D Peptidyl-prolyl cis-trans isomerase, cyclophilin-type 4e-55
    ProfileScan Peptidyl-prolyl cis-trans isomerase, cyclophilin-type 32.354
    Coil coiled-coil 0
    HMMSmart U box domain 6.7e-08

    See the detailed result >

    AT5G67530.1

    Model type
    Protein coding
    Short Description
    plant U-box 49
    Computational Description
    plant U-box 49 (PUB49); FUNCTIONS IN: ubiquitin-protein ligase activity, peptidyl-prolyl cis-trans isomerase activity; INVOLVED IN: protein folding, protein ubiquitination; LOCATED IN: ubiquitin ligase complex; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Cyclophilin-like (InterPro:IPR015891), Peptidyl-prolyl cis-trans isomerase, cyclophilin-type (InterPro:IPR002130), U box domain (InterPro:IPR003613), Peptidyl-prolyl cis-trans isomerase, cyclophilin-type, conserved site (InterPro:IPR020892); BEST Arabidopsis thaliana protein match is: Cyclophilin-like peptidyl-prolyl cis-trans isomerase family protein (TAIR:AT1G01940.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR