F11816

RIKEN Arabidopsis full-length cDNA overexpressed Arabidopsis lines

Original: F11816

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T2 seed (PO:0009010)
  • increased size (PATO:0000586)
    (Seed::Shape::large)
  • increased length (PATO:0000573)
    (Seed::Shape::long)

Invisible phenotypes

Original: F11816

Determination of introduced cDNA(s)

  • RAFL06-80-M23 - RIKEN Arabidopsis Full-length cDNAs - Original: RAFL06-80-M23 - Resource: pda03787

    full reading [+] show sequence

    Nucleotide sequence: RAFL06-80-M23 - full reading 
    AAAAGAAGAA GAAGAAGAAA AACTTTCGAT ATGGATAAGA GCTGTAACTC 
    CTCCGGCGAT TCCTCCGCCG TATCCGCCTC TGCAACGAGT AGTACCGGTA 
    ACAATACAAC GAACAGAGAT CATTACCTGA GACAACTCAA TAAGCTGTCT 
    CATAAGATAT CAAAACCGAC GAACTCTTCC TCCTCCGTCT CCGTCGCGAA 
    TCGTGAAATT GATCTTCCAC CTCCTCCACC GCTGCAAATC AATCAAGGGA 
    ATCTCCATCA ACATCAACCT CCTGTTTACA ATATCAACAA GAACGATTTC 
    AGAGATGTTG TTCAGAAACT AACCGGTTCA CCTGCACATG AACGGATCTC 
    TGCTCCGCCG CAACAACCGA TTCATCACCC TAAACCTCAA CAGAGTTCGC 
    GTCTACATAG GATCCGTCCT CCTCCTTTGG TTCACGTTAT CAATCGTCCT 
    CCTGGTTTGC TAAATGACGC ACTTATCCCT CAAGGTTCTC ATCACATGAA 
    TCAAAACTGG ACTGGCGTTG GATTTAACCT TCGACCAACG GCGCCGCTTT 
    CTCCTCTCCC GCCGTTACCA CCGGTTCACG CGGCGGCGGA ATCACCGGTC 
    TCTTCGTACA TGCGGTATCT CCAGAACTCG ATGTTCGCAA TCGATTCGAA 
    TCGGAAAGAG TTCTCTGGAT TATCTCCGTT AGCTCCTTTG GTCTCACCTC 
    GTTGGTACCA ACAACAGGAA AACGCTCCAC CATCGCAGCA TAACAGTTTT 
    CCACCACCAC ATCCTCCTCC TCCTTCCTCT GCTGTTTCGC AGACGGTGCC 
    GACATCGATT CCGGCGCCTC CACTGTTTGG ATGTTCAAGT TCGCCTAAAT 
    CTCCGTACGG ATTACTCTCA CCGAGCATAC TTTTATCGCC ATCGTCAGGT 
    CAATTAGGGT TCCCTGTATC TCCGACGACG GTGCCGCTTC CTAGCCCTAA 
    ATACAAAGGT CATTGATCAG AAAATCGGAA ACCCTTGTCG GTCAAAGTGA 
    GAAAACGTCG TCGTTTTGAC CGTCGCGACA AAATTCCCTT TGTTCTTTTT 
    GTACATCATT AGTGGAGAGT GGTGGGATCA TTTGTTTTTT TTTTTGTTAA 
    TTAACTCAAA GATTACTTAA ATCCGTTTTT TTTTTTACTT TCTTTTGTTT 
    TCATGGTTTG TTCATGTTAG AAACAAAGAA GACTAGGAAA AAGAAAGGAA 
    TACACTTTTG CAACTAAAAA AAAAAAAAAA AA

    Gene models with high sequence identity

    1. AT1G78310.1 [+] show detail - VQ motif-containing protein
      E-value: 0; Score: 100.00

     

    InterPro Scan Digest

    See the detailed result >

    AT1G78310.1

    Model type
    Protein coding
    Short Description
    VQ motif-containing protein
    Computational Description
    VQ motif-containing protein; LOCATED IN: chloroplast; EXPRESSED IN: 17 plant structures; EXPRESSED DURING: 10 growth stages; CONTAINS InterPro DOMAIN/s: VQ (InterPro:IPR008889); BEST Arabidopsis thaliana protein match is: VQ motif-containing protein (TAIR:AT2G35230.1); Has 2188 Blast hits to 1760 proteins in 229 species: Archae - 0; Bacteria - 55; Metazoa - 822; Fungi - 398; Plants - 644; Viruses - 80; Other Eukaryotes - 189 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR