F11929

RIKEN Arabidopsis full-length cDNA overexpressed Arabidopsis lines

Original: F11929

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T2 seed (PO:0009010)
  • increased size (PATO:0000586)
    (Seed::Shape::large)
  • increased length (PATO:0000573)
    (Seed::Shape::long)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: F11929

Determination of introduced cDNA(s)

  • RAFL09-34-B19 - RIKEN Arabidopsis Full-length cDNAs - Original: RAFL09-34-B19 - Resource: pda06039

    full reading [+] show sequence

    Nucleotide sequence: RAFL09-34-B19 - full reading 
    GGAGCAACAG TCATCAAAGA GCCAATGGCT TCTTCAGGTT TCAGCGGCGA 
    TGAAACTGCG CCTTTCTTCG GATTCCTCGG CGCCGCCGCT GCGCTCGTTT 
    TCTCCTGTAT GGGAGCAGCG TACGGGACGG CGAAGAGTGG AGTTGGAGTT 
    GCGTCGATGG GAGTGATGAG ACCTGAACTT GTTATGAAAT CGATTGTTCC 
    TGTTGTCATG GCTGGTGTGT TAGGTATTTA TGGTTTGATC ATCGCTGTTA 
    TCATCAGTAC TGGGATTAAC CCCAAGGCCA AGTCTTATTA CCTATTCGAT 
    GGCTATGCTC ATCTCTCTTC TGGGCTAGCT TGTGGTCTTG CTGGTCTCTC 
    TGCTGGTATG GCTATTGGAA TCGTCGGTGA TGCTGGTGTT AGAGCGAATG 
    CGCAACAACC GAAGCTGTTT GTGGGAATGA TTCTGATTCT CATCTTTGCG 
    GAAGCGCTTG CACTGTATGG TCTCATTGTT GGTATCATCC TCTCATCTCG 
    AGCTGGTCAG TCTAGAGCTG AGTGAAAGAA GTGGAGACTT ATTGTTATTA 
    TCATCATGTC TCATATGAGA AGTTTCATGT GATGTGTAGC TTCTCCTTTC 
    AGTTCTTTTT CGTGAGTTTG AGTTCTGTTA TTATTAGACA CACTTGTGTA 
    ACTTGGGTGA AATTATATGA CTCGGTACCA AAAGCATTCT CATTTGCATT 
    ACAAATCCCT CAATTAAGTA CTAATCAATA CAACTCTAAA GTCTCTAAT

    Gene models with high sequence identity

    1. AT1G75630.1 [+] show detail - vacuolar H+-pumping ATPase 16 kDa proteolipid subunit 4
      E-value: 0; Score: 100.00

     

    InterPro Scan Digest

    Program Description E-value
    superfamily ATPase, F0/V0 complex, subunit C 7.4e-20
    superfamily ATPase, F0/V0 complex, subunit C 6.2e-07
    FPrintScan ATPase, V0 complex, proteolipid subunit C 8.4e-59
    FPrintScan ATPase, V0 complex, proteolipid subunit C 8.4e-59
    FPrintScan ATPase, V0 complex, proteolipid subunit C 8.4e-59
    FPrintScan ATPase, V0 complex, proteolipid subunit C 8.4e-59
    HMMTigr ATPase, V0 complex, proteolipid subunit C, eukaryotic 8.4e-71
    HMMPfam ATPase, F0/V0 complex, subunit C 1.3e-13
    HMMPfam ATPase, F0/V0 complex, subunit C 1.8e-18
    HMMPanther VACUOLAR ATP SYNTHASE PROTEOLIPID SUBUNIT 1.1e-77

    See the detailed result >

    AT1G75630.1

    Model type
    Protein coding
    Short Description
    vacuolar H+-pumping ATPase 16 kDa proteolipid subunit 4
    Curator Summary
    vacuolar H+-pumping ATPase 16 kD proteolipid (ava-p) mRNA,
    Computational Description
    vacuolar H+-pumping ATPase 16 kDa proteolipid subunit 4 (AVA-P4); FUNCTIONS IN: ATPase activity; INVOLVED IN: ATP synthesis coupled proton transport; LOCATED IN: plasma membrane, vacuole; EXPRESSED IN: male gametophyte, cultured cell, pollen tube; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage; CONTAINS InterPro DOMAIN/s: ATPase, F0/V0 complex, subunit C (InterPro:IPR002379), ATPase, V0 complex, proteolipid subunit C, eukaryotic (InterPro:IPR011555), ATPase, V0 complex, proteolipid subunit C (InterPro:IPR000245); BEST Arabidopsis thaliana protein match is: ATPase, F0/V0 complex, subunit C protein (TAIR:AT1G19910.1); Has 2720 Blast hits to 2495 proteins in 678 species: Archae - 169; Bacteria - 703; Metazoa - 633; Fungi - 466; Plants - 344; Viruses - 0; Other Eukaryotes - 405 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR