F11930

RIKEN Arabidopsis full-length cDNA overexpressed Arabidopsis lines

Original: F11930

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: F11930

Determination of introduced cDNA(s)

  • RAFL09-73-P16 - RIKEN Arabidopsis Full-length cDNAs - Original: RAFL09-73-P16 - Resource: pda08736

    full reading [+] show sequence

    Nucleotide sequence: RAFL09-73-P16 - full reading 
    AGCTAAAGAA GATCAAAAAC TTTTCTTAGG GCTTTGGAGA TTCGAGCTCG 
    AGTATTCATA CAAGTCTGGT GATATCCACG AAAATCAGAA GACGAGATGC 
    TAGGAGAATG TGGGAGGCTA TCAAAGACAG AGAAACCGGT CGAATTCGTT 
    CCAATTCCTT CGCCAATCGA TTCAAATCCC GCCGGATTTT GTCTCTCCAA 
    CTCTCTAATC GAAAAGACTT TGTTTCTCCT CATCGTGGCT CCGTTAACTC 
    CCTTCAGGTT GATTTGACGG AGGGGAGATA TCTTCTCTCT GGAGCAGCAG 
    ATGGTTCAGC TGCTGTATTT GATGTTCAAC GGGCCACTGA TTACGAGGCA 
    AGTGGTCTAA TTGCCAAGCA CAAGTGTATA TTTACTGTCG ACAAGCAACA 
    TGAAAATGGA CATAAATATG CCATATCCTC TGCCATTTGG TATCCCATTG 
    ACACTGGGCT CTTCATTACA GGTTCTTTTG ATCATTACTT AAAAGTCTGG 
    GATACCAATA CTGCTCAGGC GGTTGTGGAT TTTAAAATGC CTGGAAAGGT 
    TTATAGAACT GCCATGTCTT CTATGGCAAT GTCTCACACG TTAATTGCTG 
    CTGGAACTGA AGATGTCCAG GTTCGCCTCT GTGATATAGC TTCTGGGGCA 
    TTCTCTCACA CATTATCGGG TCACCGTGAT GGCGTTATGT CAGTGGAATG 
    GTCTACTTCC AGCGAGTGGG TTTTGTATAC TGGGGGTTGT GATGGTGCAA 
    TACGTTTCTG GGACATTAGA CGGGCTGGTT GTTTCCGTGT TCTAGATCAA 
    TCACAGACAC AACTTGGGTT CCGACCACCA ATTTTAAAGC GAACTGCGGT 
    TGGCAGTAAG CTTTCTTCAG TTGCAAAATC TTCTTTGGGG GGCCAAAATA 
    GGTTGAAGAC ACTGCAGAGT AAACAAACTG GAAGCCAAAG TGTAAAGGGA 
    TCATCTAGCG CTAAAGCTTC AGTGGAAAAG TCTCGACAGA AGAGAATTCA 
    CCCTGGAATG TTATCTACTC TAGATCGTGC TACGGCTCAT TATGGTGCTG 
    TTACTGGCTT AAAGGCAACT AACGATGGGA TGTATCTTCT TAGTGCTGGG 
    TCGGATTCAA GAATAAGATT GTGGGATATT GAATCTGGAC GCAACACCCT 
    GGTGAACTTT GAAACTGGAC GCATCCAGAC TAACAAAGGA ATCCAATTAG 
    ATACAAGCGA TGATCCAGCT CTGGTATTTG TTCCATGCAT GAAGACTGTG 
    AAGGCTTTTG GCATGTGGTC GGGTAGAACA ACACTGATGC TTCGTGGACA 
    CTACGAAAGC GTGAACACTT GCTGCTTTAA TTCCAATGAT CAGGAACTAT 
    ACACAAGTGG CTCAGATAGA CAAATACTTG TGTGGTCACC AGGCGGAACA 
    GTGGAAGATG AAATGGTGCA AGATGAAGTA GCCGAAGATA AAGACAATTG 
    GAGCGACTGA GAAAACAAGT TTCGGGCAGT CTTCTTTCCC AATCTGTGAA 
    TTTCCATGTG CGTTGTTCTG AGTATAGTTT TCACAAACTC GTATTACTAT 
    AGTCGGGTTT TGATTGTTTA TAAAGTAAAA CTGAAATATT TGTCAGTTAA 
    TTAGAATTTA GTTCATACTA CTAAAATGAA GATTAAACTC GTTCCGAGTC 
    AATGCGAACC GAATAAACAA CGATCGACTG TAAGACCAAA ACGAATCTCT 
    TTATTCGGCG AAGACCATAA ATTTGTAACT AAAGATAACT AAAAAAAAAA 
    AAAAAA

    Gene models with high sequence identity

    1. AT1G27840.1 [+] show detail - Transducin/WD40 repeat-like superfamily protein
      E-value: 0; Score: 100.00

     

    InterPro Scan Digest

    Program Description E-value
    ProfileScan WD40 repeat 2 11.11
    ProfileScan WD40 repeat 2 13.182
    ProfileScan WD40 repeat 2 14.886
    ProfileScan WD40 repeat 2 11.377
    ProfileScan WD40-repeat-containing domain 24.178
    superfamily WD40 repeat-like-containing domain 8e-52
    HMMPanther COCKAYNE SYNDROME WD-REPEAT PROTEIN CSA (DNA 2.6e-237
    HMMPanther WD40 REPEAT FAMILY 2.6e-237
    HMMPfam WD40 repeat, subgroup 0.073
    HMMPfam WD40 repeat, subgroup 0.00017
    HMMPfam WD40 repeat, subgroup 4.6e-07
    HMMPfam WD40 repeat, subgroup 2.6e-05
    HMMPfam WD40 repeat, subgroup 3.4e-05
    FPrintScan G-protein beta WD-40 repeat, region 2.9e-06
    FPrintScan G-protein beta WD-40 repeat, region 2.9e-06
    FPrintScan G-protein beta WD-40 repeat, region 2.9e-06
    Gene3D WD40/YVTN repeat-like-containing domain 7.7e-49
    HMMSmart WD40 repeat 0.11
    HMMSmart WD40 repeat 0.00016
    HMMSmart WD40 repeat 1.2e-07
    HMMSmart WD40 repeat 5.5e-05
    HMMSmart WD40 repeat 1e-05
    PatternScan WD40 repeat, conserved site 0
    PatternScan WD40 repeat, conserved site 0

    See the detailed result >

    AT1G27840.1

    Model type
    Protein coding
    Short Description
    Transducin/WD40 repeat-like superfamily protein
    Curator Summary
    Encodes a DDB1a interacting protein ATCSA-1 required for UV-B tolerance and genomic integrity.
    Computational Description
    ATCSA-1; CONTAINS InterPro DOMAIN/s: WD40 repeat 2 (InterPro:IPR019782), WD40 repeat, conserved site (InterPro:IPR019775), WD40 repeat (InterPro:IPR001680), G-protein beta WD-40 repeat, region (InterPro:IPR020472), WD40 repeat-like-containing domain (InterPro:IPR011046), WD40-repeat-containing domain (InterPro:IPR017986), WD40/YVTN repeat-like-containing domain (InterPro:IPR015943), WD40 repeat, subgroup (InterPro:IPR019781); BEST Arabidopsis thaliana protein match is: Transducin/WD40 repeat-like superfamily protein (TAIR:AT1G19750.1); Has 28727 Blast hits to 16574 proteins in 608 species: Archae - 26; Bacteria - 4830; Metazoa - 10091; Fungi - 6796; Plants - 3577; Viruses - 0; Other Eukaryotes - 3407 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR