F11944

RIKEN Arabidopsis full-length cDNA overexpressed Arabidopsis lines

Original: F11944

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage
Phenotypes
T2 seed (PO:0009010)
  • increased size (PATO:0000586)
    (Seed::Shape::large)
  • increased length (PATO:0000573)
    (Seed::Shape::long)

Invisible phenotypes

Original: F11944

Determination of introduced cDNA(s)

  • RAFL08-15-I12 - RIKEN Arabidopsis Full-length cDNAs - Original: RAFL08-15-I12 - Resource: pda04857

    full reading [+] show sequence

    Nucleotide sequence: RAFL08-15-I12 - full reading
    GAGAGATTGT TTTGCCGGAG ATAGTAGTTT TCGCGTCTCC AAAAACCCTT 
    CGACCTTTGC CGGAGATAGT AGTTCCTCAC TCTCTTTAAT CCGATTCATC
    GAGCCGGAGA GCTCACCTTC CGCCGCGTAA AATGGCGGCT CTAGAAAGCC
    CACTGCCGGG AACGCCGACT GCGATGAGGA ATGCTTTCGG CAACGTTTTA
    TCAGTCCTGA TCCTCGTCCT CATTGGTGTC CTCGCTTTCT CGATCCGACT
    CTTCTCTGTT ATAAAGTATG AAAGTGTGAT TCATGAGTTT GATCCTTACT
    TCAATTATAG AGTCACTCAG TTCTTATCGA AGAATGGAAT ATACGAGTTC
    TGGAATTGGT TTGATGATAG GACCTGGTAT CCTCTTGGCC GTGTGATTGG
    AGGAACTGTT TACCCTGGGT TAACTTTGAC TGCTGGAACC ATCTGGTGGG
    GATTAAATTC ATTAAACATT CCTCTGTCAG TAGAGACTGT CTGTGTCTTC
    ACTGCACCTG TATTTTCAGC TTTTGCATCC TGGGCAACTT ACCTTTTGAC
    AAAGGAAGTT AAGGGCTCCG GTGCTGGACT TGCAGCTGCT GCTCTTTTGG
    CCATGGTTCC CTCATATATA TCCCGATCTG TAGCTGGTAG CTATGACAAT
    GAAGCTGTTG CCATCTTTGC TTTGATCTTC ACTTTTTATC TTTACATAAA
    GACATTAAAT ACAGGTTCCT TATTTTATGC CACCCTGAAT GCTCTTGCAT
    ACTTTTACAT GGTATGTTCA TGGGGAGGTT ACACCTTCAT TATCAATCTG
    ATACCAATGC ACGTGCTTTT GTGCATTGTA ACTGGGCGAT ACTCTCCCCG
    ACTGTACATT GCCTATGCTC CTTTGGTTGT GTTAGGCACG TTGTTAGCGG
    CATTGGTGCC TGTTGTTGGT TTCAATGCGG TTTTGACTTC TGAACATTTT
    GCCTCGTTTT TGGTTTTTAT CATCATCCAC GTTGTAGCTC TCGTATACTA
    CATCAAAGGC ATTCTTTCTC CCAAAATGTT CAAAGTTGCT GTGACACTTG
    TTGTGTCTAT CGGCATGGTT GTGTGTTTCA TAGTTGTGGC AATTCTTGTG
    GCATTGGTGG CTTCAAGTCC AACAGGAGGA TGGAGTGGTA GGAGTTTAAG
    TTTACTTGAT CCAACTTATG CAAGCAAGTA TATTCCAATT ATTGCAAGTG
    TCAGTGAACA TCAACCTCCA ACTTGGCCAT CTTATTTCAT GGATATCAAT
    GTTTTGGCTT TCTTGGTCCC TGCTGGCATC ATTGCGTGCT TTTCGCCTCT
    ATCTGATGCC AGCTCTTTTG TGGTCCTTTA CATTGTAATG TCTGTATACT
    TTTCTGGAGT TATGGTTCGT CTTATGCTCG TGCTTGCTCC AGCAGCATGC
    ATCATGTCTG GGATTGCGCT CTCTCAAGCT TTTGATGTTT TCACGGGTTC
    CATCAAATAC CAGTTAGGCG CATCGTCTAA TTCCACAGAT GATGCAGAGG
    ACAACACTTC CACGAACAAT GCCCCAAAAG ATGATGTTTC TGCTGGTAAG
    ACTGACAAGG GTGAAGAGAT TGTAAAAGAG CGGTCTTCCA AAAAGGGCAA
    GAAGAAAGAG AGAGAACCGG CTGATAAACC TTCTGTTAAG GCCAAGATTA
    AAAAGAAGGC TCTTGTTTTG CCTCTTGAAG CCTCTATAGT TGCGCTTCTT
    CTCCTTATAA TGTTGGGTGC TTTCTATGTG ATCCATTGTG TTTGGGCAGC
    TGCAGAAGCA TATTCAGCTC CATCAATAGT TTTGACATCT CAGTCACGTG
    ATGGCCTACA CGTCTTTGAT GATTTTAGAG AGTCTTATGC ATGGTTAAGC
    CATAATACTG ATGTGGATGA TAAAGTGGCA TCATGGTGGG ACTATGGTTA
    TCAGACGACA GCTATGGCTA ATAGAACTGT GATTGTTGAC AACAACACAT
    GGAATAATAC TCACATTGCA ACTGTTGGCA CTGCAATGTC ATCTCCAGAA
    AAGGCGGCGT GGGAAATTTT CAACTCCTTG GATGTGAAAT ATGTTCTTGT
    CGTCTTTGGT GGTCTTATTG GTTACCCTAG TGATGACATC AACAAGTTTC
    TGTGGATGGT TCGTATTGGA GGCGGCGTCT TTCCACATAT AAAGGAAGCT
    GATTATCTGA GAGATGGGCA ATACCGGATT GATTCTGAGG CCACTCCAAC
    AATGTTGAAC AGCCTTATGT ACAAGCTCTC TTACTACAGG TTTGTAGAGA
    CGGATGGTAA AGGTTATGAT CGGGTGAGGC GGACAGAGAT TGGGAAGAAG
    CATTTTAAGC TTACACATTT CGAAGAGGTT TTCACGAGTC ACCATTGGAT
    GGTTCGGCTA TACAAGCTGA AACCTCCCAG GAACAGGATT CGTGGTAAAG
    CAAAGAAACT GAAATCGAAA ACAAGCTCTG GATTGAGTTC AAAATCAGCG
    AAGAAGAACC CGTGGGTCTA GAAATCCTAG AATTTTCAAT GTTGGATGGT
    GAGCTATATG TCAACTCTTA GGTCTCTTTA TTATCGAGAA AGTTGTTGCA
    GACGCAGTCA AGTTTCTGGT GTAGGATTCG TAAAAATTTT GTTAACTTTA
    TTCGAATTTC ATGTTTATTG CGGAGATTTT CAAGTACGGT AGCTAAAGTA
    TCCATATTAC ATCAAAAAAA AAAAAAAAA

    Gene models with high sequence identity

    1. AT5G19690.1 [+] show detail - staurosporin and temperature sensitive 3-like A
      E-value: 0; Score: 100.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMPanther OLIGOSACCHARYL TRANSFERASE 0
    HMMPanther 60S RIBOSOMAL PROTEIN L35 0
    HMMPfam Oligosaccharyl transferase, STT3 subunit 1.9e-133

    See the detailed result >

    AT5G19690.1

    Model type
    Protein coding
    Short Description
    staurosporin and temperature sensitive 3-like A
    Curator Summary
    encodes an oligosaccharyl transferase involved response to high salt. Mutants are hypersensitive to high salt conditions
    Computational Description
    staurosporin and temperature sensitive 3-like A (STT3A); FUNCTIONS IN: oligosaccharyl transferase activity; INVOLVED IN: response to salt stress; LOCATED IN: endoplasmic reticulum, plasma membrane, membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Oligosaccharyl transferase, STT3 subunit (InterPro:IPR003674); BEST Arabidopsis thaliana protein match is: staurosporin and temperature sensitive 3-like b (TAIR:AT1G34130.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR