F11944

RIKEN Arabidopsis full-length cDNA overexpressed Arabidopsis lines

Original: F11944

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T2 seed (PO:0009010)
  • increased size (PATO:0000586)
    (Seed::Shape::large)
  • increased length (PATO:0000573)
    (Seed::Shape::long)

Invisible phenotypes

Original: F11944

Determination of introduced cDNA(s)

  • RAFL08-15-I12 - RIKEN Arabidopsis Full-length cDNAs - Original: RAFL08-15-I12 - Resource: pda04857

    full reading [+] show sequence

    Nucleotide sequence: RAFL08-15-I12 - full reading 
    GAGAGATTGT TTTGCCGGAG ATAGTAGTTT TCGCGTCTCC AAAAACCCTT 
    CGACCTTTGC CGGAGATAGT AGTTCCTCAC TCTCTTTAAT CCGATTCATC 
    GAGCCGGAGA GCTCACCTTC CGCCGCGTAA AATGGCGGCT CTAGAAAGCC 
    CACTGCCGGG AACGCCGACT GCGATGAGGA ATGCTTTCGG CAACGTTTTA 
    TCAGTCCTGA TCCTCGTCCT CATTGGTGTC CTCGCTTTCT CGATCCGACT 
    CTTCTCTGTT ATAAAGTATG AAAGTGTGAT TCATGAGTTT GATCCTTACT 
    TCAATTATAG AGTCACTCAG TTCTTATCGA AGAATGGAAT ATACGAGTTC 
    TGGAATTGGT TTGATGATAG GACCTGGTAT CCTCTTGGCC GTGTGATTGG 
    AGGAACTGTT TACCCTGGGT TAACTTTGAC TGCTGGAACC ATCTGGTGGG 
    GATTAAATTC ATTAAACATT CCTCTGTCAG TAGAGACTGT CTGTGTCTTC 
    ACTGCACCTG TATTTTCAGC TTTTGCATCC TGGGCAACTT ACCTTTTGAC 
    AAAGGAAGTT AAGGGCTCCG GTGCTGGACT TGCAGCTGCT GCTCTTTTGG 
    CCATGGTTCC CTCATATATA TCCCGATCTG TAGCTGGTAG CTATGACAAT 
    GAAGCTGTTG CCATCTTTGC TTTGATCTTC ACTTTTTATC TTTACATAAA 
    GACATTAAAT ACAGGTTCCT TATTTTATGC CACCCTGAAT GCTCTTGCAT 
    ACTTTTACAT GGTATGTTCA TGGGGAGGTT ACACCTTCAT TATCAATCTG 
    ATACCAATGC ACGTGCTTTT GTGCATTGTA ACTGGGCGAT ACTCTCCCCG 
    ACTGTACATT GCCTATGCTC CTTTGGTTGT GTTAGGCACG TTGTTAGCGG 
    CATTGGTGCC TGTTGTTGGT TTCAATGCGG TTTTGACTTC TGAACATTTT 
    GCCTCGTTTT TGGTTTTTAT CATCATCCAC GTTGTAGCTC TCGTATACTA 
    CATCAAAGGC ATTCTTTCTC CCAAAATGTT CAAAGTTGCT GTGACACTTG 
    TTGTGTCTAT CGGCATGGTT GTGTGTTTCA TAGTTGTGGC AATTCTTGTG 
    GCATTGGTGG CTTCAAGTCC AACAGGAGGA TGGAGTGGTA GGAGTTTAAG 
    TTTACTTGAT CCAACTTATG CAAGCAAGTA TATTCCAATT ATTGCAAGTG 
    TCAGTGAACA TCAACCTCCA ACTTGGCCAT CTTATTTCAT GGATATCAAT 
    GTTTTGGCTT TCTTGGTCCC TGCTGGCATC ATTGCGTGCT TTTCGCCTCT 
    ATCTGATGCC AGCTCTTTTG TGGTCCTTTA CATTGTAATG TCTGTATACT 
    TTTCTGGAGT TATGGTTCGT CTTATGCTCG TGCTTGCTCC AGCAGCATGC 
    ATCATGTCTG GGATTGCGCT CTCTCAAGCT TTTGATGTTT TCACGGGTTC 
    CATCAAATAC CAGTTAGGCG CATCGTCTAA TTCCACAGAT GATGCAGAGG 
    ACAACACTTC CACGAACAAT GCCCCAAAAG ATGATGTTTC TGCTGGTAAG 
    ACTGACAAGG GTGAAGAGAT TGTAAAAGAG CGGTCTTCCA AAAAGGGCAA 
    GAAGAAAGAG AGAGAACCGG CTGATAAACC TTCTGTTAAG GCCAAGATTA 
    AAAAGAAGGC TCTTGTTTTG CCTCTTGAAG CCTCTATAGT TGCGCTTCTT 
    CTCCTTATAA TGTTGGGTGC TTTCTATGTG ATCCATTGTG TTTGGGCAGC 
    TGCAGAAGCA TATTCAGCTC CATCAATAGT TTTGACATCT CAGTCACGTG 
    ATGGCCTACA CGTCTTTGAT GATTTTAGAG AGTCTTATGC ATGGTTAAGC 
    CATAATACTG ATGTGGATGA TAAAGTGGCA TCATGGTGGG ACTATGGTTA 
    TCAGACGACA GCTATGGCTA ATAGAACTGT GATTGTTGAC AACAACACAT 
    GGAATAATAC TCACATTGCA ACTGTTGGCA CTGCAATGTC ATCTCCAGAA 
    AAGGCGGCGT GGGAAATTTT CAACTCCTTG GATGTGAAAT ATGTTCTTGT 
    CGTCTTTGGT GGTCTTATTG GTTACCCTAG TGATGACATC AACAAGTTTC 
    TGTGGATGGT TCGTATTGGA GGCGGCGTCT TTCCACATAT AAAGGAAGCT 
    GATTATCTGA GAGATGGGCA ATACCGGATT GATTCTGAGG CCACTCCAAC 
    AATGTTGAAC AGCCTTATGT ACAAGCTCTC TTACTACAGG TTTGTAGAGA 
    CGGATGGTAA AGGTTATGAT CGGGTGAGGC GGACAGAGAT TGGGAAGAAG 
    CATTTTAAGC TTACACATTT CGAAGAGGTT TTCACGAGTC ACCATTGGAT 
    GGTTCGGCTA TACAAGCTGA AACCTCCCAG GAACAGGATT CGTGGTAAAG 
    CAAAGAAACT GAAATCGAAA ACAAGCTCTG GATTGAGTTC AAAATCAGCG 
    AAGAAGAACC CGTGGGTCTA GAAATCCTAG AATTTTCAAT GTTGGATGGT 
    GAGCTATATG TCAACTCTTA GGTCTCTTTA TTATCGAGAA AGTTGTTGCA 
    GACGCAGTCA AGTTTCTGGT GTAGGATTCG TAAAAATTTT GTTAACTTTA 
    TTCGAATTTC ATGTTTATTG CGGAGATTTT CAAGTACGGT AGCTAAAGTA 
    TCCATATTAC ATCAAAAAAA AAAAAAAAA

    Gene models with high sequence identity

    1. AT5G19690.1 [+] show detail - staurosporin and temperature sensitive 3-like A
      E-value: 0; Score: 100.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMPanther OLIGOSACCHARYL TRANSFERASE 0
    HMMPanther 60S RIBOSOMAL PROTEIN L35 0
    HMMPfam Oligosaccharyl transferase, STT3 subunit 1.9e-133

    See the detailed result >

    AT5G19690.1

    Model type
    Protein coding
    Short Description
    staurosporin and temperature sensitive 3-like A
    Curator Summary
    encodes an oligosaccharyl transferase involved response to high salt. Mutants are hypersensitive to high salt conditions
    Computational Description
    staurosporin and temperature sensitive 3-like A (STT3A); FUNCTIONS IN: oligosaccharyl transferase activity; INVOLVED IN: response to salt stress; LOCATED IN: endoplasmic reticulum, plasma membrane, membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Oligosaccharyl transferase, STT3 subunit (InterPro:IPR003674); BEST Arabidopsis thaliana protein match is: staurosporin and temperature sensitive 3-like b (TAIR:AT1G34130.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR