F12006

RIKEN Arabidopsis full-length cDNA overexpressed Arabidopsis lines

Original: F12006

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: F12006

Determination of introduced cDNA(s)

  • RAFL08-10-E23 - RIKEN Arabidopsis Full-length cDNAs - Original: RAFL08-10-E23 - Resource: pda04580

    full reading [+] show sequence

    Nucleotide sequence: RAFL08-10-E23 - full reading 
    AATCGCGCTT CCGTCGCCGA CGCCATTTTA CTCGCCGTCG TCATCTCCGG 
    CCACGCTTGT CATCGTTCGC AATTAATCGA AATCGAAATT TTCCGATTCC 
    TGAAAAAAAT GAATTTCTTA AACTCAGCAG CATCCATTTG CAGAAGAGTT 
    AGTTTGAGGG AACTGATCAC TGAGGTTCCT GCTTATAGTG GCAGTAGCAT 
    TTCCGATGGT TCTTCAAGTG GCTTGAGTTT GGTCTTCAAG CGTTGGGCTA 
    CTAAGAAAAC TGCTGGTTCT ACAAAGAACG GTCGTGACTC TAATCCCAAG 
    TTTCTCGGTG TTAAGAAATT CGGAGGAGAG AGTGTGATAC CAGGAAACAT 
    CATAGTTCGT CAACGGGGAA CTCGGTTTCA TCCTGGAGAC TATGTGGGGA 
    TTGGTAAGGA CCATACTCTG TTTGCATTGA AGGAAGGACG AGTCAGGTTC 
    GAGAAAAGCA AGATTACAGG ACGCAAATGG ATTCATGTTG ATCCAACAGG 
    TGGTCATGTT CTTCACCCTA TCTACACAAA AGCTGCAGCT GCTCAATCGA 
    CTAAGTTGAA GACAGCTTCA TAGTCGTGAA TACTGATTGC AACAATCTAA 
    ACGTGGTTTT CATTTCCTTT AGATCATGTG ATCTCTCGAG TAAAAGATGA 
    TGCTATCTTA GAGCAGAACC ACTCAATTCA ATAACATCTG CTGTTTTGTT 
    T

    Gene models with high sequence identity

    1. AT5G15220.1 [+] show detail - Ribosomal protein L27 family protein
      E-value: 0; Score: 100.00

     

    InterPro Scan Digest

    Program Description E-value
    superfamily Ribosomal protein L27 6.4e-22
    HAMAP Ribosomal protein L27 25.899
    HMMPanther Ribosomal protein L27 1.2e-45
    BlastProDom Ribosomal protein L27 2e-23
    HMMTigr Ribosomal protein L27 3.9e-40
    HMMPfam Ribosomal protein L27 6.8e-38
    PatternScan Ribosomal protein L27, conserved site 0
    FPrintScan Ribosomal protein L27 9e-35
    FPrintScan Ribosomal protein L27 9e-35
    FPrintScan Ribosomal protein L27 9e-35

    See the detailed result >

    AT5G15220.1

    Model type
    Protein coding
    Short Description
    Ribosomal protein L27 family protein
    Computational Description
    Ribosomal protein L27 family protein; FUNCTIONS IN: structural constituent of ribosome; INVOLVED IN: translation; LOCATED IN: ribosome, intracellular; CONTAINS InterPro DOMAIN/s: Ribosomal protein L27 (InterPro:IPR001684), Ribosomal protein L27, conserved site (InterPro:IPR018261); BEST Arabidopsis thaliana protein match is: Ribosomal protein L27 family protein (TAIR:AT2G16930.3); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR