F12126

RIKEN Arabidopsis full-length cDNA overexpressed Arabidopsis lines

Original: F12126

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T1  
whole plant (PO:0000003)
  • increased height (PATO:0000570)
    (Adult plant::Plant height::tall)
cauline leaf (PO:0000013)
  • epinastic (PATO:0000945)
    (Cauline leaf::Shape::epinastic)
rosette leaf (PO:0000014)
  • abnormal (PATO:0000460)
    (Rosette leaf::Others)
stem (PO:0009047)
  • abnormal (PATO:0000460)
    (Stem::Others)
T2  
whole plant (PO:0000003)
  • decreased height (PATO:0000569)
    (Adult plant::Plant height::short)
cauline leaf (PO:0000013)
  • decreased size (PATO:0000587)
    (Cauline leaf::Shape::small)
  • decreased width (PATO:0000599)
    (Cauline leaf::Shape::narrow)
rosette leaf (PO:0000014)
  • epinastic (PATO:0000945)
    (Rosette leaf::Shape::epinastic)
  • abnormal (PATO:0000460)
    (Rosette leaf::Others)
stem (PO:0009047)
  • decreased thickness (PATO:0000592)
    (Stem::Shape::thin)
  • desaturated green (PATO:0001272)
    (Stem::Color::pale)
stem internode (PO:0020142)
  • decreased length (PATO:0000574)
    (Stem::Shape::short internode)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: F12126

Determination of introduced cDNA(s)

  • RAFL06-07-A07 - RIKEN Arabidopsis Full-length cDNAs - Original: RAFL06-07-A07 - Resource: pda01391

    full reading [+] show sequence

    Nucleotide sequence: RAFL06-07-A07 - full reading 
    GCCGCTTCTG TTCGGTGTCC TCTCTCTCTT TCACTACTCA CCACCACTCT 
    CTCTCTCTCT CCCTCCATCT CTCTTGGATT CTCTCTCAGA TTCCATGGAA 
    GCTCCAAAAA GCTGATTCGT TCAGCCAATT TTTCTTCACT CTCTCTCAGA 
    TTCGGATCCG TGGTCAGATC AACCACCGTG TGTTTTCCGA TCCGATTCGA 
    TTCTTTTTTT TGTCAGAGCT CTCAGATAAA TACTAGGATT CCGTTTCCAC 
    CACAGATCCT TGATTTGATT TGGATTTATT TCTTCTTCTT TCTCTCTTCG 
    AGTTTGATTC CACAAGATAC CTTGTCCTGC ATTGGAGAAA CTAATTTAAG 
    GTAAGGTTTG ACTACTTAGA TGGTATGCAG CAGTTTCATA AGGAGTTTCA 
    TTGTTCAAGC TGGTTGTCGT ATTGGGGTGT TGGCTCAAGG AAGACATCAG 
    TTTATTCATA TTAAGAAGAC TTTGAGTGTG GGTTTTGGAT TTAGAACTAG 
    TGTGATTGGA TTTAGAACAA CCAGTGGAAT TGGATTTAGA ACTAGTGCGA 
    AGATGATGGT TGATACTTCT GCTGGAGAGA AACGTATATC CTTAGTTGAT 
    ATGCCGCCTG AGAAAGTTGA TGATGGTGGA TACATCGGTG GTGGGTGGAA 
    AAATGATGAT GGAAGCTTGA GCTGTGGGTA CTGTAGTTTC AGAGGGAAAA 
    GATCTACGAT GGAAGATTTC TATGATATCA AAGCTTCCAC TATTGAAGGC 
    CAAGCAGTTT GCATGTTTGG AATATTTGAT GGCCATGGTG GTTCACGTGC 
    TGCTGAATAC CTGAAGGAAC ACCTGTTTAA CAATCTCATG AAGCATCCAC 
    AATTTTTGAC AGACACCAAG CTGGCATTAA ATGAAACATA TAAACAAACT 
    GATGTAGCAT TCCTCGAGTC CGAAAAGGAT ACTTACAGAG ATGATGGCTC 
    CACAGCATCT GCTGCTGTGT TGGTGGGGAA CCATTTGTAT GTTGCAAATG 
    TTGGAGACTC GAGGACAATA GTTTCTAAAG CTGGGAAAGC GATCGCGCTA 
    TCTGATGACC ATAAGCCAAA TAGAAGCGAT GAAAGAAAGC GAATTGAAAG 
    TGCTGGTGGT GTTATCATGT GGGCAGGAAC ATGGAGAGTA GGTGGGGTGT 
    TGGCTATGTC CCGGGCCTTT GGTAACAGAA TGCTGAAGCA ATTCGTTGTT 
    GCTGAACCCG AGATACAAGA TCTAGAGATA GATCATGAGG CCGAGTTGCT 
    TGTGCTTGCA AGTGACGGTT TATGGGATGT GGTACCAAAT GAGGATGCGG 
    TAGCCCTTGC TCAGAGCGAG GAAGAGCCCG AAGCAGCTGC CCGCAAGTTA 
    ACTGACACTG CCTTCAGCCG TGGCAGTGCA GACAACATCA CGTGCATTGT 
    TGTTAAATTC CGTCATGATA AGACAGAATC TCCTAAAATC GAAACAAACG 
    CCATGGCTGA ATCGGAACCT GAACTGAACC CCACAACTGA ACTGGAACCT 
    GAATCAAACC CCAGTACTGC ATTGGAAACT GAATCAATCC CCAAAGCTGA 
    ACTGGAATCC GAACCTGATG CTATACCTGA TCCAAAACCT GAAACCGAAC 
    CAGAGACCAA GGGTGAGAAA GCTGGTGAGT AAGGTAGCAG CCGGGGAAAG 
    GTGTCCATAC TGTTGGGGAC ATGTGGAAAC AGATGAATAT AAAATTGCTT 
    AGTAAGTTGT GTGGTTTGTG GCTACCTGTA ACGTGTGAGG ATTTGTGTTT 
    TTTGGTTTTG TGTTGCATTC ATGCACATGC CTATGCCTGC CTTGAGGACG 
    ACGACGACCC TTTTGACATG TCCCCGATTT TTGTCTATTC ATTTTACCCT 
    ATTTTGTTTT TGTTGGTGCT ACTCACACCA AAAACAGCAC ATTTGTTCTC 
    TGTTTCTCCT ACTTTTTTCT ATCTTTTATT TAAAACACCG TCCATTCCAA 
    TAAAAAAAAA AAAAAA

    Gene models with high sequence identity

    1. AT5G53140.1 [+] show detail - Protein phosphatase 2C family protein
      E-value: 0; Score: 99.95

     

    InterPro Scan Digest

    Program Description E-value
    HMMPfam Protein phosphatase 2C, N-terminal 1.2e-63
    HMMSmart Protein phosphatase 2C-related 0.00570000021701947
    HMMPanther PTHR13832:SF87 0
    Gene3D Protein phosphatase 2C-related 2.70001369379003e-75
    PatternScan Protein phosphatase 2C, manganese/magnesium aspartate binding site 0
    superfamily Protein phosphatase 2C-related 1.5e-77
    HMMPanther Protein phosphatase 2C 0
    HMMSmart Protein phosphatase 2C-related 2.0000139277205e-85

    See the detailed result >

    AT5G53140.1

    Model type
    Protein coding
    Short Description
    Protein phosphatase 2C family protein
    Computational Description
    Protein phosphatase 2C family protein; FUNCTIONS IN: protein serine/threonine phosphatase activity, catalytic activity; INVOLVED IN: protein amino acid dephosphorylation; LOCATED IN: protein serine/threonine phosphatase complex; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein phosphatase 2C, manganese/magnesium aspartate binding site (InterPro:IPR000222), Protein phosphatase 2C-related (InterPro:IPR001932), Protein phosphatase 2C (InterPro:IPR015655), Protein phosphatase 2C, N-terminal (InterPro:IPR014045); BEST Arabidopsis thaliana protein match is: Protein phosphatase 2C family protein (TAIR:AT5G10740.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR