F12130

RIKEN Arabidopsis full-length cDNA overexpressed Arabidopsis lines

Original: F12130

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage
Phenotypes
T2 seed (PO:0009010)
  • increased size (PATO:0000586)
    (Seed::Shape::large)
  • increased length (PATO:0000573)
    (Seed::Shape::long)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: F12130

Determination of introduced cDNA(s)

  • RAFL09-19-L13 - RIKEN Arabidopsis Full-length cDNAs - Original: RAFL09-19-L13 - Resource: pda05529

    full reading [+] show sequence

    Nucleotide sequence: RAFL09-19-L13 - full reading
    AAAAACATTC AGACACAAAT TTAGTTTCTT CTTCTTTTGG TTCTGTCTGA 
    ATCCAATTTT CTTATATTTT ATTTCCTCCA CCACCGTGAG ATATGATCGC
    CGCCGGAGCT AAATCGCTAT TAGGGCTTTC GATGGCTTCT CCAAAAGGGA
    TTTTCGATAG CAATTCAATG AGTAATTCAA GATCTGTTGT TGTTGTTCGT
    GCTTGTGTTT CTATGGATGG ATCTCAAACT CTGAGTCATA ACAAAAATGG
    ATCTATTCCT GAGGTTAAAT CCATTAACGG TCACACGGGA CAAAAGCAAG
    GACCTTTGTC TACGGTCGGA AACTCGACAA ATATAAAGTG GCATGAATGT
    TCTGTTGAGA AAGTTGATAG ACAGAGATTG CTTGATCAGA AAGGATGTGT
    GATTTGGGTC ACCGGTCTTA GTGGTTCAGG GAAGAGTACT TTGGCTTGTG
    CTTTGAATCA GATGTTGTAT CAAAAGGGGA AGCTTTGTTA TATTCTTGAT
    GGTGATAATG TTAGGCATGG CTTAAACCGT GATCTTAGCT TTAAAGCTGA
    GGATCGTGCA GAGAATATTC GTAGAGTTGG AGAGGTTGCT AAGCTTTTTG
    CGGATGCTGG AATAATCTGC ATTGCGAGTT TGATATCTCC TTATAGAACA
    GATAGGGACG CTTGTCGAAG TTTGCTCCCC GAGGGAGATT TTGTTGAGGT
    GTTCATGGAT GTACCGCTTA GTGTTTGCGA GGCGAGGGAT CCAAAGGGTC
    TTTACAAGCT TGCTCGTGCA GGAAAGATCA AAGGTTTTAC CGGGATCGAT
    GACCCTTACG AGCCACCATT GAACTGCGAG ATTTCTCTAG GACGTGAAGG
    AGGAACTTCT CCTATCGAAA TGGCGGAAAA GGTCGTCGGA TACTTAGATA
    ACAAGGGTTA TCTTCAAGCA TAACATACTT CTAGATACAC AAATTTGTTA
    TCTCACGGTC TTAGTTCTAT TTTACGAGCC AAAGTATAAA AGTAAGCAAA
    TCCATGGCTG TTTTATGGAA TCACAAGTTC GACAAAATAA ATATAAATCT
    CATAATTTTT CTTGTCCCTT TTTTTTTGTA TCATAAATCT TGATGTTATG
    GTTCTGTATA TAATATGTGT GAAATAAGGT TAAGCCTAAA AAT

    Gene models with high sequence identity

    1. AT2G14750.1 [+] show detail - APS kinase
      E-value: 0; Score: 100.00

     

    InterPro Scan Digest

    Program Description E-value
    HAMAP Adenylylsulphate kinase, C-terminal 35.531
    superfamily P-loop containing nucleoside triphosphate hyd 2.9e-44
    HMMPfam Adenylylsulphate kinase, C-terminal 3e-71
    HMMTigr Adenylylsulphate kinase, C-terminal 8.1e-101
    Gene3D no description 1.9e-76
    HMMPanther ADENYLSULFATE KINASE 1.9e-116
    HMMPanther ADENYLSULFATE KINASE/SULFATE ADENYLTRANSFERAS 1.9e-116

    See the detailed result >

    AT2G14750.1

    Model type
    Protein coding
    Short Description
    APS kinase
    Curator Summary
    Encodes adenosine-5'-phosphosulfate kinase. Provides activated sulfate for sulfation of secondary metabolites, including the glucosinolates. Essential for pollen viability.
    Computational Description
    APS kinase (APK); CONTAINS InterPro DOMAIN/s: Adenylylsulphate kinase, C-terminal (InterPro:IPR002891); BEST Arabidopsis thaliana protein match is: APS-kinase 2 (TAIR:AT4G39940.1); Has 5042 Blast hits to 5042 proteins in 1485 species: Archae - 54; Bacteria - 2991; Metazoa - 244; Fungi - 284; Plants - 130; Viruses - 2; Other Eukaryotes - 1337 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR