F12130

RIKEN Arabidopsis full-length cDNA overexpressed Arabidopsis lines

Original: F12130

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T2 seed (PO:0009010)
  • increased size (PATO:0000586)
    (Seed::Shape::large)
  • increased length (PATO:0000573)
    (Seed::Shape::long)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: F12130

Determination of introduced cDNA(s)

  • RAFL09-19-L13 - RIKEN Arabidopsis Full-length cDNAs - Original: RAFL09-19-L13 - Resource: pda05529

    full reading [+] show sequence

    Nucleotide sequence: RAFL09-19-L13 - full reading 
    AAAAACATTC AGACACAAAT TTAGTTTCTT CTTCTTTTGG TTCTGTCTGA 
    ATCCAATTTT CTTATATTTT ATTTCCTCCA CCACCGTGAG ATATGATCGC 
    CGCCGGAGCT AAATCGCTAT TAGGGCTTTC GATGGCTTCT CCAAAAGGGA 
    TTTTCGATAG CAATTCAATG AGTAATTCAA GATCTGTTGT TGTTGTTCGT 
    GCTTGTGTTT CTATGGATGG ATCTCAAACT CTGAGTCATA ACAAAAATGG 
    ATCTATTCCT GAGGTTAAAT CCATTAACGG TCACACGGGA CAAAAGCAAG 
    GACCTTTGTC TACGGTCGGA AACTCGACAA ATATAAAGTG GCATGAATGT 
    TCTGTTGAGA AAGTTGATAG ACAGAGATTG CTTGATCAGA AAGGATGTGT 
    GATTTGGGTC ACCGGTCTTA GTGGTTCAGG GAAGAGTACT TTGGCTTGTG 
    CTTTGAATCA GATGTTGTAT CAAAAGGGGA AGCTTTGTTA TATTCTTGAT 
    GGTGATAATG TTAGGCATGG CTTAAACCGT GATCTTAGCT TTAAAGCTGA 
    GGATCGTGCA GAGAATATTC GTAGAGTTGG AGAGGTTGCT AAGCTTTTTG 
    CGGATGCTGG AATAATCTGC ATTGCGAGTT TGATATCTCC TTATAGAACA 
    GATAGGGACG CTTGTCGAAG TTTGCTCCCC GAGGGAGATT TTGTTGAGGT 
    GTTCATGGAT GTACCGCTTA GTGTTTGCGA GGCGAGGGAT CCAAAGGGTC 
    TTTACAAGCT TGCTCGTGCA GGAAAGATCA AAGGTTTTAC CGGGATCGAT 
    GACCCTTACG AGCCACCATT GAACTGCGAG ATTTCTCTAG GACGTGAAGG 
    AGGAACTTCT CCTATCGAAA TGGCGGAAAA GGTCGTCGGA TACTTAGATA 
    ACAAGGGTTA TCTTCAAGCA TAACATACTT CTAGATACAC AAATTTGTTA 
    TCTCACGGTC TTAGTTCTAT TTTACGAGCC AAAGTATAAA AGTAAGCAAA 
    TCCATGGCTG TTTTATGGAA TCACAAGTTC GACAAAATAA ATATAAATCT 
    CATAATTTTT CTTGTCCCTT TTTTTTTGTA TCATAAATCT TGATGTTATG 
    GTTCTGTATA TAATATGTGT GAAATAAGGT TAAGCCTAAA AAT

    Gene models with high sequence identity

    1. AT2G14750.1 [+] show detail - APS kinase
      E-value: 0; Score: 100.00

     

    InterPro Scan Digest

    Program Description E-value
    HAMAP Adenylylsulphate kinase, C-terminal 35.531
    superfamily P-loop containing nucleoside triphosphate hyd 2.9e-44
    HMMPfam Adenylylsulphate kinase, C-terminal 3e-71
    HMMTigr Adenylylsulphate kinase, C-terminal 8.1e-101
    Gene3D no description 1.9e-76
    HMMPanther ADENYLSULFATE KINASE 1.9e-116
    HMMPanther ADENYLSULFATE KINASE/SULFATE ADENYLTRANSFERAS 1.9e-116

    See the detailed result >

    AT2G14750.1

    Model type
    Protein coding
    Short Description
    APS kinase
    Curator Summary
    Encodes adenosine-5'-phosphosulfate kinase. Provides activated sulfate for sulfation of secondary metabolites, including the glucosinolates. Essential for pollen viability.
    Computational Description
    APS kinase (APK); CONTAINS InterPro DOMAIN/s: Adenylylsulphate kinase, C-terminal (InterPro:IPR002891); BEST Arabidopsis thaliana protein match is: APS-kinase 2 (TAIR:AT4G39940.1); Has 5042 Blast hits to 5042 proteins in 1485 species: Archae - 54; Bacteria - 2991; Metazoa - 244; Fungi - 284; Plants - 130; Viruses - 2; Other Eukaryotes - 1337 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR