F12237

RIKEN Arabidopsis full-length cDNA overexpressed Arabidopsis lines

Phenotypes

Morphological phenotypes

Generation	Anatomical entity /structure development stage	Phenotypes
T1
	whole plant (PO:0000003)	decreased height (PATO:0000569) (Adult plant::Plant height::short)
	cauline leaf (PO:0000013)	present in greater numbers in organism (PATO:0000470) (Cauline leaf::Number::many) epinastic (PATO:0000945) (Cauline leaf::Shape::epinastic)
	rosette leaf (PO:0000014)	decreased size (PATO:0000587) (Rosette leaf::Shape::small) increased width (PATO:0000600) (Rosette leaf::Shape::wide) present in fewer numbers in organism (PATO:0001997) (Rosette leaf::Number::few)
	stem (PO:0009047)	decreased thickness (PATO:0000592) (Stem::Shape::thin)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: F12237

Determination of introduced cDNA(s)

RAFL03-08-H22 - RIKEN Arabidopsis Full-length cDNAs - Original: RAFL03-08-H22 - Resource: pda00149

full reading [+] show sequence

ACCCACATCT TCTAACAGTC TCTCACTTTC TCTCTTCTCT CTCTCTCTTT 
CTTTTTTGAG TCCGTGAAGG CTAAGTCTGA AAGAATGACG AAGGATGAGT 
TGACGGAGGA AGAGTCGCTC TCCGGCAAGG ACTACTTAGA CCCACCGCCT 
GTGAAGACGT TCGAGGTGAG AGAGCTCAAG AAGTGGTCCT TCTACAGAGC 
TGTCATCGCT GAGTTCATAG CTACTTTGCT CTTTCTATAC GTGACTGTTT 
TGACAGTCAT CGGCTTTAAG AGCCAGACTG ATATCAACGC CGGCGGCGGA 
GCTTGTGCCA GTGTCGGCCT CCTAGGCATC TCTTGGGCCT TTGGTGGCAT 
GATATTCATC CTCGTCTACT GCACTGCCGG CATCTCTGGT GGACACATCA 
ATCCCGCGGT GACGTTTGGG CTATTCCTAG CTAGCAAGGT ATCATTGGTT 
AGAGCTGTGT CGTACATGGT GGCTCAGTGT CTCGGAGCCA CTTGTGGAGT 
TGGTTTGGTG AAAGTCTTCC AGTCGACTTA TTACAACCGC TACGGTGGTG 
GAGCCAACAT GCTCTCCGAC GGATACAATG TTGGCGTTGG GGTTGGTGCT 
GAGATTATCG GCACTTTTGT CCTCGTCTAC ACCGTCTTCT CCGCTACCGA 
CCCTAAGCGA AATGCCCGTG ACTCTCACAT TCCTGTATTA GCACCATTGC 
CAATTGGATT TTCCGTGTTC ATGGTTCATT TAGCCACAAT TCCAATTACT 
GGCACCGGAA TAAACCCGGC TAGGAGTTTT GGAGCTGCCG TCATCTACAA 
CAATCAAAAG GCTTGGGATG ATCAGTGGAT CTTCTGGGTC GGTCCATTTG 
TGGGTGCAGC CATTGCAGCA TTTTACCATC AGTTTGTGTT GAGAGCTGGT 
GCAATGAAGG CCTATGGGTC AGTCAGGAGC CAGCTTCATG AGCTCCATGC 
TTAAATTTGT TATTTCGAAC TAGCGAAGAG GTGAAGAATT CTTTGGGCCA 
GGAAGGGAGG AAGGAAAAAA AAAAGGGACC CAAATCATAT AAAAGAAAAA 
ACGAATATTA TTTAAGATGG TCGGTGAGTG ACATTTACTG TGTCTTATTT 
GTGGCTTTGT GGGGGAGGTT TGTGTGTAAC AATTTGTAAC GTACAAGCAA 
TGTATGTGTT ATTTGATGC

Gene models with high sequence identity

AT2G39010.1 [+] show detail - plasma membrane intrinsic protein 2E
E-value: 0; Score: 100.00

InterPro Scan Digest

Program	Description	E-value
Gene3D	Major intrinsic protein	2.4e-62
HMMTigr	Aquaporin	2.7e-85
HMMPfam	Major intrinsic protein	1.2e-83
FPrintScan	Major intrinsic protein	4.3e-70
FPrintScan	Major intrinsic protein	4.3e-70
FPrintScan	Major intrinsic protein	4.3e-70
FPrintScan	Major intrinsic protein	4.3e-70
FPrintScan	Major intrinsic protein	4.3e-70
FPrintScan	Major intrinsic protein	4.3e-70
HMMPanther	AQUAPORIN-RELATED	4e-187
HMMPanther	Major intrinsic protein	4e-187
superfamily	Major intrinsic protein	3.8e-61
PatternScan	Major intrinsic protein, conserved site	0

See the detailed result >

AT2G39010.1

Model type: Protein coding
Short Description: plasma membrane intrinsic protein 2E
Computational Description: plasma membrane intrinsic protein 2E (PIP2E); FUNCTIONS IN: water channel activity; INVOLVED IN: transport, response to nematode; LOCATED IN: plasma membrane, membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Major intrinsic protein, conserved site (InterPro:IPR022357), Aquaporin (InterPro:IPR012269), Major intrinsic protein (InterPro:IPR000425); BEST Arabidopsis thaliana protein match is: plasma membrane intrinsic protein 2;5 (TAIR:AT3G54820.1); Has 10794 Blast hits to 10789 proteins in 2219 species: Archae - 81; Bacteria - 5177; Metazoa - 1475; Fungi - 441; Plants - 2519; Viruses - 2; Other Eukaryotes - 1099 (source: NCBI BLink).
Link: InterPro Scan - TAIR