F12237

RIKEN Arabidopsis full-length cDNA overexpressed Arabidopsis lines

Original: F12237

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage
Phenotypes
T1  
whole plant (PO:0000003)
  • decreased height (PATO:0000569)
    (Adult plant::Plant height::short)
cauline leaf (PO:0000013)
  • present in greater numbers in organism (PATO:0000470)
    (Cauline leaf::Number::many)
  • epinastic (PATO:0000945)
    (Cauline leaf::Shape::epinastic)
rosette leaf (PO:0000014)
  • decreased size (PATO:0000587)
    (Rosette leaf::Shape::small)
  • increased width (PATO:0000600)
    (Rosette leaf::Shape::wide)
  • present in fewer numbers in organism (PATO:0001997)
    (Rosette leaf::Number::few)
stem (PO:0009047)
  • decreased thickness (PATO:0000592)
    (Stem::Shape::thin)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: F12237

Determination of introduced cDNA(s)

  • RAFL03-08-H22 - RIKEN Arabidopsis Full-length cDNAs - Original: RAFL03-08-H22 - Resource: pda00149

    full reading [+] show sequence

    Nucleotide sequence: RAFL03-08-H22 - full reading
    ACCCACATCT TCTAACAGTC TCTCACTTTC TCTCTTCTCT CTCTCTCTTT 
    CTTTTTTGAG TCCGTGAAGG CTAAGTCTGA AAGAATGACG AAGGATGAGT
    TGACGGAGGA AGAGTCGCTC TCCGGCAAGG ACTACTTAGA CCCACCGCCT
    GTGAAGACGT TCGAGGTGAG AGAGCTCAAG AAGTGGTCCT TCTACAGAGC
    TGTCATCGCT GAGTTCATAG CTACTTTGCT CTTTCTATAC GTGACTGTTT
    TGACAGTCAT CGGCTTTAAG AGCCAGACTG ATATCAACGC CGGCGGCGGA
    GCTTGTGCCA GTGTCGGCCT CCTAGGCATC TCTTGGGCCT TTGGTGGCAT
    GATATTCATC CTCGTCTACT GCACTGCCGG CATCTCTGGT GGACACATCA
    ATCCCGCGGT GACGTTTGGG CTATTCCTAG CTAGCAAGGT ATCATTGGTT
    AGAGCTGTGT CGTACATGGT GGCTCAGTGT CTCGGAGCCA CTTGTGGAGT
    TGGTTTGGTG AAAGTCTTCC AGTCGACTTA TTACAACCGC TACGGTGGTG
    GAGCCAACAT GCTCTCCGAC GGATACAATG TTGGCGTTGG GGTTGGTGCT
    GAGATTATCG GCACTTTTGT CCTCGTCTAC ACCGTCTTCT CCGCTACCGA
    CCCTAAGCGA AATGCCCGTG ACTCTCACAT TCCTGTATTA GCACCATTGC
    CAATTGGATT TTCCGTGTTC ATGGTTCATT TAGCCACAAT TCCAATTACT
    GGCACCGGAA TAAACCCGGC TAGGAGTTTT GGAGCTGCCG TCATCTACAA
    CAATCAAAAG GCTTGGGATG ATCAGTGGAT CTTCTGGGTC GGTCCATTTG
    TGGGTGCAGC CATTGCAGCA TTTTACCATC AGTTTGTGTT GAGAGCTGGT
    GCAATGAAGG CCTATGGGTC AGTCAGGAGC CAGCTTCATG AGCTCCATGC
    TTAAATTTGT TATTTCGAAC TAGCGAAGAG GTGAAGAATT CTTTGGGCCA
    GGAAGGGAGG AAGGAAAAAA AAAAGGGACC CAAATCATAT AAAAGAAAAA
    ACGAATATTA TTTAAGATGG TCGGTGAGTG ACATTTACTG TGTCTTATTT
    GTGGCTTTGT GGGGGAGGTT TGTGTGTAAC AATTTGTAAC GTACAAGCAA
    TGTATGTGTT ATTTGATGC

    Gene models with high sequence identity

    1. AT2G39010.1 [+] show detail - plasma membrane intrinsic protein 2E
      E-value: 0; Score: 100.00

     

    InterPro Scan Digest

    Program Description E-value
    Gene3D Major intrinsic protein 2.4e-62
    HMMTigr Aquaporin 2.7e-85
    HMMPfam Major intrinsic protein 1.2e-83
    FPrintScan Major intrinsic protein 4.3e-70
    FPrintScan Major intrinsic protein 4.3e-70
    FPrintScan Major intrinsic protein 4.3e-70
    FPrintScan Major intrinsic protein 4.3e-70
    FPrintScan Major intrinsic protein 4.3e-70
    FPrintScan Major intrinsic protein 4.3e-70
    HMMPanther AQUAPORIN-RELATED 4e-187
    HMMPanther Major intrinsic protein 4e-187
    superfamily Major intrinsic protein 3.8e-61
    PatternScan Major intrinsic protein, conserved site 0

    See the detailed result >

    AT2G39010.1

    Model type
    Protein coding
    Short Description
    plasma membrane intrinsic protein 2E
    Computational Description
    plasma membrane intrinsic protein 2E (PIP2E); FUNCTIONS IN: water channel activity; INVOLVED IN: transport, response to nematode; LOCATED IN: plasma membrane, membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Major intrinsic protein, conserved site (InterPro:IPR022357), Aquaporin (InterPro:IPR012269), Major intrinsic protein (InterPro:IPR000425); BEST Arabidopsis thaliana protein match is: plasma membrane intrinsic protein 2;5 (TAIR:AT3G54820.1); Has 10794 Blast hits to 10789 proteins in 2219 species: Archae - 81; Bacteria - 5177; Metazoa - 1475; Fungi - 441; Plants - 2519; Viruses - 2; Other Eukaryotes - 1099 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR