F12238

RIKEN Arabidopsis full-length cDNA overexpressed Arabidopsis lines

Original: F12238

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: F12238

Determination of introduced cDNA(s)

  • RAFL09-15-C08 - RIKEN Arabidopsis Full-length cDNAs - Original: RAFL09-15-C08 - Resource: pda01926

    full reading [+] show sequence

    Nucleotide sequence: RAFL09-15-C08 - full reading 
    CTCTTTCTTT CTCTCTCTCA GCCCTAAGAG AGAAGAAATA GGCTCTGCTC 
    TGCGCCTTTT CTACAAGAAA TTCACCAAAA AAGCTTGAAT ATTTATCGGA 
    ATCAAAGCTT GGGTTTTTAA TCCTGGTAAA GCCATGTCAC ATATGGTGTT 
    TCAGAGCGTT GTCGCTCCCA AACCCTTATC TCCTCTCAAA CCCTGTTTAC 
    CTATCCCTCG TCCACTCGTT ACTCTGCCTT GTAAGCTCCG TCGTGGCTTC 
    GTTAGAGCTT CTTCGTCCTC GTTTCTTGTC GATGATTCAG TTTCAGGACT 
    CGAGCGTTGC TTACAGTTAC CTTCTGGAGT TGAGTTAGGC ACATCTTCCT 
    CTGGCTCTTT CTCTGCAAGT ACTCAGATGT GTCCTGTGAT GAAAGGCAAA 
    TTTGGTTCGG TAGGAGCTGT TACTTTGGAA AAAGGGAAGC TTGATATGAC 
    CCAGAAGATT TCTGAGACTA GCCCTGAGAT TGCAACTGGA GGAGGGGGTG 
    GAAACATTGG AAAGAGTATC AATAATGGTG GTGGCGATGG AGGTGACGAT 
    AATGGTGATG ATGATGATTA CTTTGATGAA TTCGATGATG GTGATGAGGG 
    AGATGATGAT GGACTTTTTA GGCGTAGGAT GTTTCTCGCA GAGATTTTTG 
    ATAGGAAATT CGTTGATGCT GTGTTGAATG AATGGCAAAA AACAATGATG 
    GATTTACCTG CCGGTCTCCG TCAAGCATAT GAAATGGGTT TGGTCAGCTC 
    AGCTCAAATG GTGAAATTCC TTGCCATAAA TGCCCGTCCT ACAACGACTA 
    GAATGATCTC CCGTGCCCTT CCTCAGGGAT TATCGAGGGC CTTTGTTGGC 
    AGGATGTTGG CGGATCCTGC ATTTCTCTAT AAACTTCTTT TGGAGCAAGC 
    TGCCACGGTT GGATGCTCAG TTTGGTGGGA GGTGAAGAAT CGTAAGAATA 
    GACTAAAAGA GGAATGGGAT CTTGCACTTA TAAATGTTCT TACTGTATCA 
    GCATGCAATG CAGCTGCTGT TTGGTTACTA GCTCCATGTC GTTCCTATGG 
    AAACACATTC CGGTTTGACC TGCAAAATAC ATTACAAAAG CTACCAAATA 
    ATTTATTTGA AATGAGCTAT CCTCTTAGAG AGTTCGACTT GCAAAAGAGA 
    TTTCATTCTC TTTTCTACAA GGCTGCAGAG TTGTCCATTC TTGGACTCGC 
    AGCAGGAACA CTCCAGGGTT CGTTGTCAAA CGTTCTAGCA GGAAAGAAGA 
    AGAACAGAGT ATCTGTGACG GTCCCATCTA TCAGCACAAA TGCTCTTGGT 
    TATGGTGCAT TTCTTGGAAT ATATGCCAAC TTGAGATATC AGCTGTTATG 
    TGGATTTGAA AGAGGAGTGA GCAGTCACTT TGACGTCATA GGAGTAGCAC 
    TCTTCTTCGG CACTGCCTTG AGGATTATGA ATGTGCAATT AGGGGAAAAG 
    TCAAGACAAG TATGGCTAGG TGTAGAGGCA GACCCACTGG CGCAGTCAGA 
    TGATCTGCTG GCAAAAGCAT ACAACCGACC CTCAGAGGAA GCAGTAGCAA 
    AGCCATCTTC AAAATGGTTC ATCTCAAAGA ATGCAATTGT CTCAGGGCTA 
    CTCGGGAAGA AGCAAGAAGA TTCAGTTTCA GATTCTCCAC CTCCAAAGGC 
    TCGGCGAAAA AGGATAGTGA GGAAGAAGGT GGCTGCATCT GCCTCTTAAA 
    TAACCAACAA AACCTCTAAA ATGTCACAAT TTTCAGAGTC CATGGAAGAA 
    CAACAGTGAG GTTTTGTTGT TCATTTGAGG CACACATGAA AAAGGTTTTG 
    TTGCCAGAGG AAGGAAGAAG GGATCACCAA ACTTGGAGGA ATTGAAAAAA 
    AGCTCTATAG CTTCTTTTTT TTTTTTTTTA CTTTATGACT CGTTCTCTCT 
    AGTTTTAAGT GCTTTTGGAA AGACATTTCT ATTTTTAGGT GTGGTGATAA 
    AGATGCTTAT CTCTGGTTAA AATTCTGTAT TTTCTCAATG TTTCTAATAA 
    ATAGCCACAT CTTATACGTT CGTAAAAAAA AAAAAAAA

    Gene models with high sequence identity

    1. AT5G24690.1 [+] show detail - Protein of unknown function (DUF3411)
      E-value: 0; Score: 100.00

     

    InterPro Scan Digest

    See the detailed result >

    AT5G24690.1

    Model type
    Protein coding
    Short Description
    Protein of unknown function (DUF3411)
    Computational Description
    INVOLVED IN: biological_process unknown; LOCATED IN: mitochondrion, chloroplast, plastid, chloroplast inner membrane, chloroplast envelope; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF3411 (InterPro:IPR021825); BEST Arabidopsis thaliana protein match is: reticulata-related 1 (TAIR:AT5G22790.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR