F12251

RIKEN Arabidopsis full-length cDNA overexpressed Arabidopsis lines

Original: F12251

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T1  
rosette leaf (PO:0000014)
  • decreased size (PATO:0000587)
    (Rosette leaf::Shape::small)
  • increased width (PATO:0000600)
    (Rosette leaf::Shape::wide)
sporophyte vegetative stage (PO:0007134)
  • decreased speed (PATO:0000304)
    (Adult plant::Growth::slow)
stem (PO:0009047)
  • present in fewer numbers in organism (PATO:0001997)
    (Stem::Number::few)
  • abnormal (PATO:0000460)
    (Stem::Others)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: F12251

Determination of introduced cDNA(s)

  • RAFL06-68-J18 - RIKEN Arabidopsis Full-length cDNAs - Original: RAFL06-68-J18 - Resource: pda07619

    full reading [+] show sequence

    Nucleotide sequence: RAFL06-68-J18 - full reading 
    AGGCTCTTCT TTACTCTGGT TTCGAGTTTG GGTTGTGCAA ACATGGCGAC 
    GAGCTCTCAT CTTCTTCCTC AGGCATTGCA TATGATACCG AGAACCCCTT 
    CTTTCTCGTC GAAGAATTTA GGGGTTTCTT CAATTCTACC ACGAGCATCA 
    TCAGTGAACT CAAGACTATC AGTTTCTAGG GTTTTTCTCA ATCATTCGAG 
    CTCCAATTTT GGTTTCGCCA TCGATTCCAA GAAGAGAAAA GAGTTTATCG 
    CTAAAGCTGA AGAGAGTACT GAAGGTGAAA CTGAGGCTGT TGTGGAGAAT 
    GCTGTTGAAA CTGAAGCGGA AGGAGAAGGA GAAGCCACTG TTGCGGCGGA 
    GGAAGCTAAA CCTCCGTGGA AGACGAGAGT CAAGCTCGGA GATATCATGG 
    GGCTACTGAA CAAGAAAGCT ATTGAGGTTG CAGAGACTGT AAGACCGGTT 
    CCTGGACTTA GGACTGGGGA TATTGTAGAA ATCAAACTGG AAGTTCCTGA 
    GAACAAACGT AGGCTATCTA TCTACAAAGG TATTGTGATG TCTAGACAAA 
    ATGCAGGCAT CCACACTACT ATCCGTATCC GGAGGATTAT TGCAGGCATT 
    GGTGTTGAAA TCGTCTTTCC CATATACTCT CCCAACATAA AGGAGATAAA 
    AGTGGTAAGT CACAGGAAAG TGAGAAGAGC AAGACTTTAC TATCTGAGGG 
    ACAAACTTCC TCGTCTCTCA ACTTTTAAAT GATCACCAAA CCCAACACCA 
    GTCTTGTCTT GTGTTGTCTT CAATCTCCAA AGGTAGCTAG CTACTCTCTT 
    TTCTCTTGTA ATAATTGTTT GTTTGTTTCG TCTTTTGGAT TTCATTTCTT 
    TTCATGTAAT TTACAGTAAC AGTAATTTAA GAAAAGTAAA TCAATGTTGA 
    TTGTTTTGAT CGAAAAAAAA AAAAAAAA

    Gene models with high sequence identity

    1. AT5G47190.1 [+] show detail - Ribosomal protein L19 family protein
      E-value: 0; Score: 100.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMPfam Ribosomal protein L19 1.8e-31
    HMMPanther 50S RIBOSOMAL PROTEIN L19 4.3e-144
    HMMPanther Ribosomal protein L19 4.3e-144
    FPrintScan Ribosomal protein L19 1.9e-09
    FPrintScan Ribosomal protein L19 1.9e-09
    HMMTigr Ribosomal protein L19 1.2e-23

    See the detailed result >

    AT5G47190.1

    Model type
    Protein coding
    Short Description
    Ribosomal protein L19 family protein
    Computational Description
    Ribosomal protein L19 family protein; FUNCTIONS IN: structural constituent of ribosome; INVOLVED IN: translation, ribosome biogenesis; LOCATED IN: ribosome, chloroplast stroma, chloroplast, membrane, chloroplast envelope; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Ribosomal protein L19 (InterPro:IPR001857); BEST Arabidopsis thaliana protein match is: Ribosomal protein L19 family protein (TAIR:AT4G17560.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR