F12309

RIKEN Arabidopsis full-length cDNA overexpressed Arabidopsis lines

Original: F12309

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T2 seed (PO:0009010)
  • increased size (PATO:0000586)
    (Seed::Shape::large)
  • increased length (PATO:0000573)
    (Seed::Shape::long)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: F12309

Determination of introduced cDNA(s)

  • RAFL03-01-D08 - RIKEN Arabidopsis Full-length cDNAs - Original: RAFL03-01-D08 - Resource: pda00048

    full reading [+] show sequence

    Nucleotide sequence: RAFL03-01-D08 - full reading 
    AACAGCTTCA TCGTTTTATC TTCCAATCAA AGCAGCTCAA ATCAAGCTCG 
    CAAAGATGAT GCACATGACC TTCTACTGGG GAATCAAAGC CACAATTCTC 
    TTCGATTTCT GGAAAACTGA CTCATGGCTT AGTTACATCC TCACTTTAAT 
    CGCTTGCTTC GTCTTCTCCG CTTTCTATCA ATACCTCGAG AATCGCCGCA 
    TCCAATTCAA ATCCCTTTCT TCCTCCCGTC GTGCTCCTCC ACCGCCTCGC 
    TCTTCCTCCG GCGTCTCCGC GCCTCTTATC CCTAAATCCG GTACCAGATC 
    CGCCGCTAAA GCTGCTTCGG TTCTTCTTTT CGGCGTCAAC GCAGCGATCG 
    GTTACTTGCT GATGCTTGCA GCTATGTCTT TCAACGGAGG TGTTTTCATC 
    GCGATTGTCG TCGGATTAAC CGCCGGATAC GCTGTTTTTA GATCTGATGA 
    CGGCGGTGCT GATACCGCCA CGGATGATCC ATGTCCATGT GCTTGATAAT 
    GATTGATAAT AAAATCAAAA TCGGAAAAAT CTCAAAAAAG GTGTGTTTGA 
    TAATTGATGT TTGTATTGTT GTTTGTTTCT GTATGATTAG TTGCTTTGTA 
    ACAAAATAAT CCAATCTAAA TGTGTTTCTT GAGT

    Gene models with high sequence identity

    1. AT5G20650.1 [+] show detail - copper transporter 5
      E-value: 0; Score: 100.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMPanther COPPER TRANSPORTER 1.5e-83
    HMMPanther Ctr copper transporter 1.5e-83
    HMMPfam Ctr copper transporter 4.9e-27

    See the detailed result >

    AT5G20650.1

    Model type
    Protein coding
    Short Description
    copper transporter 5
    Curator Summary
    encodes a member of copper transporter family and functionally complements a high affinity copper transporter mutant in yeast
    Computational Description
    copper transporter 5 (COPT5); FUNCTIONS IN: copper ion transmembrane transporter activity, high affinity copper ion transmembrane transporter activity; INVOLVED IN: copper ion transport; LOCATED IN: plasma membrane, vacuole; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Ctr copper transporter (InterPro:IPR007274); BEST Arabidopsis thaliana protein match is: Ctr copper transporter family (TAIR:AT2G26975.1); Has 497 Blast hits to 497 proteins in 140 species: Archae - 0; Bacteria - 0; Metazoa - 217; Fungi - 69; Plants - 156; Viruses - 0; Other Eukaryotes - 55 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR