F12310

RIKEN Arabidopsis full-length cDNA overexpressed Arabidopsis lines

Original: F12310

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T1  
whole plant (PO:0000003)
  • increased height (PATO:0000570)
    (Adult plant::Plant height::tall)
cauline leaf (PO:0000013)
  • epinastic (PATO:0000945)
    (Cauline leaf::Shape::epinastic)
rosette leaf (PO:0000014)
  • present in greater numbers in organism (PATO:0000470)
    (Rosette leaf::Number::many)
fruit (PO:0009001)
  • increased length (PATO:0000573)
    (Silique::Shape::long)
stem (PO:0009047)
  • abnormal (PATO:0000460)
    (Stem::Others)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: F12310

Determination of introduced cDNA(s)

  • RAFL09-14-K16 - RIKEN Arabidopsis Full-length cDNAs - Original: RAFL09-14-K16 - Resource: pda05455

    full reading [+] show sequence

    Nucleotide sequence: RAFL09-14-K16 - full reading 
    TGGTTCTTCT TCTTCCTCTT CATTTTACTT TCTCTTCCCG ATTTCTCTCT 
    GTCCGATTCA CCTTTTCCTC CGATCTCGGT CTCCTTAGAT TCCGGAATAA 
    TCCCCTCAAG GCTTGGCTTA GTAATCGTCG TTTTCTCCGC CATGAGTTCC 
    AATACGGCGT CGTCCAGCGC GGGGGCAGCC GGATCGGGAG ATTCTTCCGC 
    CGCTAGGAAG AATTCAAAGC GACCCAAGTA TTCGAAGTTC ACACAGCAGG 
    AGCTTCCAGC TTGCAAGCCA ATTCTAACCC CTGGTTGGGT CATTTCGACA 
    TTTTTGATAG TCAGTGTTAT CTTTATTCCC CTTGGAGTTA TCTCCCTTTT 
    CGCTTCCCAG GATGTTGTGG AGATCGTTGA TCGGTATGAT ACTGAGTGCA 
    TTCCGGCACC TGCTAGGACT AACAAGGTTG CATATATTCA AGGAGATGGA 
    GATAAAGTTT GTAACCGGGA TCTTAAAGTG ACAAAGCGTA TGAAGCAACC 
    TATCTATGTT TATTACCAAC TTGAGAATTT CTACCAGAAT CACCGAAGGT 
    ATGTAAAAAG TCGAAGTGAT TCACAGTTGA GAAGTACAAA ATACGAGAAT 
    CAAATAAGTG CATGCAAGCC TGAGGATGAT GTTGGTGGGC AGCCGATTGT 
    GCCGTGTGGT CTAATTGCTT GGAGTCTTTT TAACGACACA TACGCGTTAT 
    CAAGAAACAA TGTAAGCCTA GCTGTGAACA AAAAAGGCAT TGCATGGAAG 
    AGTGACAAGG AACACAAGTT TGGGAACAAG GTCTTCCCCA AGAATTTTCA 
    AAAGGGGAAT ATCACAGGTG GTGCTACTTT AGATCCAAGA ATACCGCTTA 
    GTGAACAAGA AGATCTCATT GTGTGGATGA GAACCGCAGC ATTGCCAACA 
    TTTAGAAAAC TTTACGGAAA GATAGAGTCT GACCTCGAGA TGGGTGACAC 
    CATACACGTT AAGCTGAACA ACAACTACAA CACGTACAGC TTCAATGGAA 
    AGAAGAAGCT TGTTTTGTCA ACCACTAGTT GGCTGGGTGG GAAGAACGAT 
    TTCCTTGGCA TTGCTTACCT GACAGTTGGC GGGATCTGTT TCATTTTGGC 
    CCTCGCATTT ACCATCATGT ACCTTGTGAA ACCCAGGCGT CTTGGAGATC 
    CGTCCTACTT GTCATGGAAT AGAAATCCTG GAGGTCGGTA ACAAGCTTGG 
    AAAGGGAGAG AGAGAGCTCT AATCTGCGTG TGTAAATCTT ATCCATCCAT 
    GTACACATAC AATGTAATTT TTGCTTACAT ACTATGTAAT CCTTGCTTGC 
    AAAATGGTTT CTTCGGTGAG AGCTTAAATC CCACATAATA CTTTGTTGTT 
    GTTGTTCCAA ACCAGTCTAA TATATTACTT TTGTCCCC

    Gene models with high sequence identity

    1. AT1G54320.1 [+] show detail - LEM3 (ligand-effect modulator 3) family protein / CDC50 family protein
      E-value: 0; Score: 100.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMPIR Protein of unknown function DUF284, transmembrane eukaryotic 1.5e-230
    HMMPanther Protein of unknown function DUF284, transmembrane eukaryotic 5.4e-159
    HMMPfam Protein of unknown function DUF284, transmembrane eukaryotic 2.8e-95

    See the detailed result >

    AT1G54320.1

    Model type
    Protein coding
    Short Description
    LEM3 (ligand-effect modulator 3) family protein / CDC50 family protein
    Computational Description
    LEM3 (ligand-effect modulator 3) family protein / CDC50 family protein; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast, membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF284, transmembrane eukaryotic (InterPro:IPR005045); BEST Arabidopsis thaliana protein match is: ALA-interacting subunit 1 (TAIR:AT3G12740.1); Has 852 Blast hits to 849 proteins in 218 species: Archae - 0; Bacteria - 0; Metazoa - 251; Fungi - 222; Plants - 160; Viruses - 0; Other Eukaryotes - 219 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR