F12319

RIKEN Arabidopsis full-length cDNA overexpressed Arabidopsis lines

Original: F12319

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: F12319

Determination of introduced cDNA(s)

  • RAFL06-14-A20 - RIKEN Arabidopsis Full-length cDNAs - Original: RAFL06-14-A20 - Resource: pdz87589

    5 prime EST [+] show sequence

    Nucleotide sequence: RAFL06-14-A20 - 5 prime EST
    GAACCATCTC TGAACTCATC TTTCAATCTC TCTTGATTCC AATCCATTCT 
    TCTTCAAGTG CCGGGTTCTC GGGTCGGATC TTCTAAGTCT AGCTAGGGAT
    AATGGCTACT GTCACTACTC ATGCCTCGGC CTCGATTTTC CGACCTTGTA
    CTTCAAAGCC AAGATTCCTC ACCGGTTCTT CCGGTAGGTT GAACCGCGAC
    TTGTCGTTTA CATCGATCGG TTCATCGGCC AAAACGTCGT CGTTCAAGGT
    TGAAGCTAAG AAAGGAGAAT GGTTGCCCGG TTTGGCATCG CCTGATTATC
    TCACCGGCAG TCTTGCCGGT GACAATGGGT TTGACCCGTT GGGTCTAGCA
    GAGGATCCAG AGAACTTGAA ATGGTTCGTC CAGGCAGAGC TGGTCAACGG
    ACGATGGGCT ATGCTCGGTG TCGCTGGGAT GCTTTTGCCG GAAGTTTTCA
    CCAAGATCGG AATCATAAAT GTTCCTGAGT GGTACGATGC TGGGAAAGAG
    CAGTATTTTG CATCGTCGTC GACATTGTTC GTGATCGAGT TCATATTGTT
    TCATTACGTT GAGATCAGAC GGTGGCAAGA CATCAAGAAC CCAGGAAGTG
    TGAACCAAGA CCCTATCTTT AAGCAATACA GCTTACCTAA GGGTGAAGTT
    GGTTACCCTG GNGGAATCTT TAACCCGC

    Gene models with high sequence identity

    1. AT3G47470.1 [+] show detail - light-harvesting chlorophyll-protein complex I subunit A4
      E-value: 0; Score: 99.85

    3 prime EST [+] show sequence

    Nucleotide sequence: RAFL06-14-A20 - 3 prime EST
    AGTTCCTCTG TACATTGAAG ATTCCAAATT TGTTCATGGA GCTACAACGG 
    TTCAACAATA ATTCAAGCTC AAAAACCAAG AACTCTAAGA TGAAACACAC
    TCACAGACAG ACATGAAAGT GATGGAAGAT AGATAGGTAT GAGATCATAA
    GTCTGTCTTC ACTCTTTAGT TGAAGGTTTG GACAATAGTG TTGTGCCATG
    GGTCAGACAA GTGCTGCAAC AGATTCTCAA ATGGTCCTTT TCCAGTCACA
    TTGTGTTGAA CCACAAACCC TAAGAATGCC AACATCGCCA ACCTCCCGTT
    TGCTAGCTCT TTCTCCTTGG CCTCTTGCGT AGGAGCAAAG TTAAGCGGGT
    TAAAGATTCC ACCAGGGTAA CCAACTTCAC CCTTAGGTAA GCTGTATTGC
    TTAAAGATAG GGTCTTGGTT CACACTTCCT GGGTTCTTGA TGTCTTGCCA
    CCGTCTGATC TCAACGTAAT GAAACAATAT GAACTCGATC ACGAACAATG
    TCGACGACGA TGCAAAATAC TGCTCTTTCC CAGCATCGTA CCACTCAGGA
    ACATTTATGA TTCCGATCTT GGTGAAAACT TCCGGCAAAA GCATCCCAGC
    GACACCGAGC ATAGCCCATC GTCCGTTGAC CAGCTCTGCC TGGACGAACC
    ATTTCAAGTT CTCTGGATCC TCTGCTAGAC CCAACGGGTC AAACCCATTG
    TCACCG

    Gene models with high sequence identity

    1. AT3G47470.1 [+] show detail - light-harvesting chlorophyll-protein complex I subunit A4
      E-value: 0; Score: 100.00

    AT3G47470.1

    Model type
    Protein coding
    Short Description
    light-harvesting chlorophyll-protein complex I subunit A4
    Curator Summary
    Encodes a chlorophyll a/b-binding protein that is more similar to the PSI Cab proteins than the PSII cab proteins. The predicted protein is about 20 amino acids shorter than most known Cab proteins.
    Computational Description
    light-harvesting chlorophyll-protein complex I subunit A4 (LHCA4); FUNCTIONS IN: chlorophyll binding; INVOLVED IN: response to karrikin, photosynthesis; LOCATED IN: in 7 components; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Chlorophyll A-B binding protein (InterPro:IPR001344); BEST Arabidopsis thaliana protein match is: photosystem I light harvesting complex gene 2 (TAIR:AT3G61470.1); Has 2336 Blast hits to 2249 proteins in 223 species: Archae - 0; Bacteria - 0; Metazoa - 3; Fungi - 0; Plants - 1967; Viruses - 0; Other Eukaryotes - 366 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR