F12330

RIKEN Arabidopsis full-length cDNA overexpressed Arabidopsis lines

Original: F12330

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T1  
whole plant (PO:0000003)
  • decreased height (PATO:0000569)
    (Adult plant::Plant height::short)
rosette leaf (PO:0000014)
  • decreased size (PATO:0000587)
    (Rosette leaf::Shape::small)
  • increased width (PATO:0000600)
    (Rosette leaf::Shape::wide)
  • present in fewer numbers in organism (PATO:0001997)
    (Rosette leaf::Number::few)
stem (PO:0009047)
  • present in fewer numbers in organism (PATO:0001997)
    (Stem::Number::few)
  • abnormal (PATO:0000460)
    (Stem::Shape::zigzag)
  • abnormal (PATO:0000460)
    (Stem::Others)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: F12330

Determination of introduced cDNA(s)

  • RAFL06-79-H24 - RIKEN Arabidopsis Full-length cDNAs - Original: RAFL06-79-H24 - Resource: pda03761

    full reading [+] show sequence

    Nucleotide sequence: RAFL06-79-H24 - full reading 
    CTCTGATTCA TCTCTCTCTC TCTCTTCATT TCCATGGAAG GAAGGTGATG 
    AGCTTTCTCA ATCTCTCTTT ACTGATTCTT AATGAAAGTC ATCTCCTTTC 
    TCTTTGGTAT CCCTTTTCTT CTTCTCTGCT TAATTCCTGA CCAAAAATTG 
    TGACAAGATC TTTCAATCCA AAAGCTATAT ACATTAAGAG CTCAGGTCAC 
    TATCTGACGG GATCCGTGAC AATAGTGGTT ACTGGAGTCA AAAGCAGCTC 
    CTTGAATCTT GAGTGTTAAG TAGATAGGTA AGGTAACCGT TCATGGCCTC 
    GAAGTATGGT TCTGGAGTTC TCCCAGAAAA TAAGAAGGAA AAGGGCGATA 
    AGGAAACCCC GGAAACATCT TATTCCAGTC AAAGTGTCTC AGTAAACACT 
    TTGGCAGATC AAGTATCTTC AACTTTGTCT TTTGCTCCAA GCAGCGACAG 
    TAAAACTGGA GGTGAAGTTA AATTTAATGA AAAGTCTGAT CAGAGCGGGA 
    AGAGTAACAC ATGTAGACCA AGCACAAGCA GTGATATCAG TGATGAGAGC 
    ACATGTAGCA GCTTTAGTGG TAACAACAAG CCTCACAAGG CGAATGACGT 
    GAGATGGGAA GCAATTCAAG CTGTCCGAAC GAAACATGGC GTATTGGGGT 
    TGAACCATTT TAGGCTCTTG AAGAGGTTAG GGTGTGGGGA TATCGGAACT 
    GTCCACCTTG CTGAGTTGCA CGGAACAAGG TGTTTTTTTG CAATGAAGGT 
    TATGGACAAA GGGGCTTTGG CTAGCCGTAA AAAGCTTCTT AGAGCTCAGA 
    CCGAGAGGGA GATATTGCAG TGTCTTGACC ACCCTTTTCT CCCAACTTTG 
    TATAGTCACT TCGAGACTGA GAAGTTCTCA TGTTTGGTTA TGGAGTTCTG 
    TCCTGGAGGT GACTTGCATA CCCTTCGACA AAGACAGCCC GGGAAGCGAT 
    TTTCAGAACA AGCAGCAAAG TTTTATGTAG CGGAAGTACT TCTTGCAATG 
    GAATATCTTC ATATGCTTGG CATCATATAC CGCGATCTAA AGCCAGAGAA 
    TGTTCTTGTT AGAGATGATG GACATGTGAT GCTTTCTGAC TTCGACCTCT 
    CCTTGAGATG TACTGTTAGC CCCACAGTGG TCAGATCAAC TGTTCTTGCG 
    TCTGAAGGGC AAAAGAACTC GGGTTATTGT GCGCAACCTG CTTGCATCCA 
    ACAGCCATCT TGCATTTCTG CTCCTACAAC ATGCTTTTCT CCACGTTATT 
    TCTCAAGTAA ATCCAAGAAA GACAAGAAAA TGAAAAACGA AACTGGAAAC 
    CAGGTAAGTC CATTGCCCGA GCTCGTTGCT GAGCCCACAA GTGCTCGCTC 
    AATGTCATTT GTTGGCACAC ATGAGTATTT AGCTCCTGAG ATCATCAAAG 
    GTGAAGGGCA TGGGAGTGCG GTTGATTGGT GGACTTTTGG GATCTTTTTG 
    TATGAGCTAT TGTTTGGTAA AACCCCGTTT AAAGGGTCAG GAAACCGAGC 
    AACACTCTTC AACGTTGTGG GTCAGCCTCT GCGTTTCCCA GAATCTCCAG 
    TTGTCAGTTT TGCTGCTAGG GATTTGATTA GGAGTCTGCT TGTGAAAGAG 
    CCTCAGCATA GATTAGCGTA TAAGCGTGGT GCAACTGAGA TGAAGCAACA 
    TCCTTTCTTT GAAGGAGTGA ATTGGGCATT GGTTCGATGC GCTAGCCCAC 
    CAGAGATACC AAAACCGGTT GATTATGAGA GTGCGCCTGC TACTCCAGCA 
    GCAGCCACAT CTACTAGTGT CAAGTCTGAC CAGAGTAATT ATCTGGAGTT 
    CGATTTCTTT TGACATATTT CAGCAAGAAA ACTGCCATTA GATTTATCAA 
    TTTGTTCTTG GCGATCTGCA AATACGTTTA GTATTTTGAA AATGTGATAA 
    CTCTTTTTAA TTCTTTGTCA ATGCCATTCT TGAGAGTTCA CGCCAAAAAA 
    AAAAAAAAAA

    Gene models with high sequence identity

    1. AT4G26610.1 [+] show detail - D6 protein kinase like 1
      E-value: 0; Score: 100.00

     

    InterPro Scan Digest

    Program Description E-value
    ProfileScan Protein kinase, catalytic domain 43.453
    HMMPfam Serine/threonine-protein kinase-like domain 1e-35
    HMMPfam Serine/threonine-protein kinase-like domain 5.8e-20
    HMMPanther NONPHOTOTROPIC HYPOCOTYL PROTEIN 1(PHOTOTROPI 1.1e-255
    HMMPanther SERINE/THREONINE PROTEIN KINASE 1.1e-255
    HMMSmart Serine/threonine-protein kinase domain 8.5e-87
    HMMSmart Tyrosine-protein kinase, catalytic domain 0.0000004
    Gene3D no description 1.1e-58
    PatternScan Serine/threonine-protein kinase, active site 0
    superfamily Protein kinase-like domain 1.7e-84

    See the detailed result >

    AT4G26610.1

    Model type
    Protein coding
    Short Description
    D6 protein kinase like 1
    Computational Description
    D6 protein kinase like 1 (D6PKL1); FUNCTIONS IN: kinase activity; INVOLVED IN: protein amino acid phosphorylation; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein kinase, catalytic domain (InterPro:IPR000719), Serine/threonine-protein kinase domain (InterPro:IPR002290), Serine/threonine-protein kinase-like domain (InterPro:IPR017442), Protein kinase-like domain (InterPro:IPR011009), Serine/threonine-protein kinase, active site (InterPro:IPR008271); BEST Arabidopsis thaliana protein match is: D6 protein kinase (TAIR:AT5G55910.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR