F12335

RIKEN Arabidopsis full-length cDNA overexpressed Arabidopsis lines

Phenotypes

Morphological phenotypes

Generation	Anatomical entity /structure development stage	Phenotypes
T1
	cauline leaf (PO:0000013)	epinastic (PATO:0000945) (Cauline leaf::Shape::epinastic)
	rosette leaf (PO:0000014)	decreased size (PATO:0000587) (Rosette leaf::Shape::small)
	stem (PO:0009047)	decreased thickness (PATO:0000592) (Stem::Shape::thin)
T2
	whole plant (PO:0000003)	decreased height (PATO:0000569) (Adult plant::Plant height::short)
	cauline leaf (PO:0000013)	abnormal (PATO:0000460) (Cauline leaf::Others)
	rosette leaf (PO:0000014)	decreased size (PATO:0000587) (Rosette leaf::Shape::small) epinastic (PATO:0000945) (Rosette leaf::Shape::epinastic) abnormal (PATO:0000460) (Rosette leaf::Others) increased width (PATO:0000600) (Rosette leaf::Shape::wide) present in greater numbers in organism (PATO:0000470) (Rosette leaf::Number::many) abnormal (PATO:0000460) (Rosette leaf::Others)
	fruit (PO:0009001)	decreased length (PATO:0000574) (Silique::Shape::short)
	stem (PO:0009047)	decreased thickness (PATO:0000592) (Stem::Shape::thin) present in greater numbers in organism (PATO:0000470) (Stem::Number::many)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: F12335

Determination of introduced cDNA(s)

RAFL06-07-N14 - RIKEN Arabidopsis Full-length cDNAs - Original: RAFL06-07-N14 - Resource: pda02854

full reading [+] show sequence

ATGCATCACT TGTTTCTCCA TAATAAGAGA GTTTTAAGCA TTTGAAACAA 
AAAAAATGGC TTCCAAGGCT TTGGTTCTGT TGGGTCTCTT TGCTGTTCTT 
CTCGTCGTCT CAGAAGTAGC CGCGGCATCT TCTGCCACAG TGAATTCAGA 
GAGTAAGGAA ACTGTGAAAC CTGATCAACG TGGCTACGGT GACAATGGAG 
GAAATTACAA TAACGGAGGA GGTTACCAGG GAGGAGGGGG TAATTACCAA 
GGAGGAGGAG GTAATTACCA AGGAGGAGGA GGTAATTACC AAGGAGGAGG 
AGGAAGATAC CAAGGAGGAG GAGGACGGTA CCAAGGAGGA GGAGGACGAT 
ACCAAGGAGG CGGTGGGCGA CAAGGAGGAG GGGGAAGTGG GGGAAGTTAC 
TGCCGCCACG GCTGCTGCTA CAGAGGTTAC AACGGCTGCT CAAGATGCTG 
CTCGTATGCC GGAGAAGCTG TTCAGACTCA GCCCGGTCAC TAAAACAATA 
TATTAACCAA TCACCACCAT GCATGTATTG CATTATGTAT GTATGATTTT 
AAGTAAACCA TGGTGCGTTT GTAATGAACT GCCTCAAGTT TTTGAGGCAC 
TATAGATTAA GAAGAGAACT ATGGGAATAA AGTTTGATTA TGTAATGTTT 
TATGTGGTTT GAGTTGTAAT ACTTGCTGTT TGCATAATAA AATCGTTTGT 
AGTTTATGT

Gene models with high sequence identity

AT2G05520.1 [+] show detail - glycine-rich protein 3
E-value: 0; Score: 100.00

InterPro Scan Digest

Program	Description	E-value
HMMPfam	Glycine rich protein	1e-19
Coil	coiled-coil	0

See the detailed result >

AT2G05520.1

Model type: Protein coding
Short Description: glycine-rich protein 3
Curator Summary: Encodes a glycine-rich protein that is expressed mainly in stems and leaves. mRNA levels are upregulated in response to ABA, salicylic acid and ethylene but downregulated in response to dessication.
Computational Description: glycine-rich protein 3 (GRP-3); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: response to ethylene stimulus, response to desiccation, response to abscisic acid stimulus, response to salicylic acid stimulus; LOCATED IN: endomembrane system; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Glycine rich protein (InterPro:IPR010800); BEST Arabidopsis thaliana protein match is: glycine-rich protein 3 short isoform (TAIR:AT2G05380.1); Has 67000 Blast hits to 17256 proteins in 1389 species: Archae - 28; Bacteria - 27528; Metazoa - 20984; Fungi - 3299; Plants - 7053; Viruses - 888; Other Eukaryotes - 7220 (source: NCBI BLink).
Link: InterPro Scan - TAIR