F12336

RIKEN Arabidopsis full-length cDNA overexpressed Arabidopsis lines

Original: F12336

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: F12336

Determination of introduced cDNA(s)

  • RAFL09-19-P22 - RIKEN Arabidopsis Full-length cDNAs - Original: RAFL09-19-P22 - Resource: pda05546

    full reading [+] show sequence

    Nucleotide sequence: RAFL09-19-P22 - full reading 
    GAGACTAAGG TGAATCCATG GCGTCCAAGA TTGTCTCAGC CATAGTATTT 
    GTGTTTAACC TCATTGCCTT TGGTTTAGCC GTTGCTGCTG AACAAAGAAG 
    AAGCACTGCA AGGGTTGTGC AGGACACTGA GGTGCAATAT AACTACTGTG 
    TGTATGACTC GGACAGAGCT ACAGGGTATG GAGTTGGAGC CTTTTTGTTC 
    TCAGTGGCTA GTCAAATCCT TATCATGCTC GTTAGCCGTT GCTTCTGTTG 
    TGGAAAGCCT CTCAAGCCTG GCGGTTCACG CGCTCTTGCC CTCATTCTCT 
    TCATTGTTAG CTGGATGTTC TTCTTGATAG CGGAGATATG TCTATTAGCT 
    GGATCGGTAG AGAATGCATA CCACACAAAG TACAGGACAA TGTTCATGGA 
    CAATCCTCCT GATTGTCAAA CTCTACGTAA AGGCGTCTTT GCAGCAGGCG 
    CCTCATTCGT CTTCTTCAAC GCCATTGTCT CTCAGTTCTA CTATTTCTTC 
    TATTTCTCTG CTGCTGAGGC CTCTCTTTCA CCTTACTAGA GGTTCTTAAC 
    CAACAAATAA GTTTTATTTT TTTCTCTCTA AATGTGCTAT TTGATATGCT 
    AATATCATAT TTTGAGGTGG GTTTTCTATG TACAACTATG ATGAAATGTT 
    ACAACTATGA CAAAATTATT TGAAAGTGAT GGTACACATG AGATTTGTAG 
    ATTTATTTGT ATGGTTATTA GATCGAGTTG AAATGTTGTT TTAAAAAGAG 
    TGGATGTAAT TTGACGATTT TGTGACATAT GACATAATGC TCTTATTCAT 
    TGAG

    Gene models with high sequence identity

    1. AT4G27435.1 [+] show detail - Protein of unknown function (DUF1218)
      E-value: 0; Score: 99.88

     

    InterPro Scan Digest

    See the detailed result >

    AT4G27435.1

    Model type
    Protein coding
    Short Description
    Protein of unknown function (DUF1218)
    Computational Description
    Protein of unknown function (DUF1218); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF1218 (InterPro:IPR009606); BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF1218) (TAIR:AT3G15480.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR