F12340

RIKEN Arabidopsis full-length cDNA overexpressed Arabidopsis lines

Original: F12340

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T2 seed (PO:0009010)
  • increased size (PATO:0000586)
    (Seed::Shape::large)
  • increased length (PATO:0000573)
    (Seed::Shape::long)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: F12340

Determination of introduced cDNA(s)

  • RAFL05-14-E15 - RIKEN Arabidopsis Full-length cDNAs - Original: RAFL05-14-E15 - Resource: pda09335

    full reading [+] show sequence

    Nucleotide sequence: RAFL05-14-E15 - full reading 
    AAGAGATCGA AAATGGCTGA TGTTCACAAA GGAAAGGTTT GTGTAACCGG 
    TGCCGGAGGG TTTTTGGGTT CGTGGGTCGT CGATCTTCTT CTCTCTAAGG 
    ATTACTTCGT CCATGGCACT GTCAGAGACC CTGATAATGA AAAGTATGCT 
    CATTTGAAGA AGCTCGAGAA AGCTGGTGAC AAACTCAAGC TCTTCAAGGC 
    TGATTTGTTG GACTACGGCT CTCTTCAATC TGCTATTGCA GGTTGCAGCG 
    GAGTCTTCCA TGTCGCTTGC CCGGTTCCAC CAGCTTCAGT CCCTAATCCT 
    GAGGTAGAAT TGATCGCACC TGCTGTGGAT GGCACGCTGA ATGTGCTTAA 
    GGCATGCATT GAAGCGAATG TTAAGCGTGT TGTGTATGTT TCCTCTGTAG 
    CTGCGGCTTT CATGAACCCT ATGTGGTCAA AGAATCAAGT ATTAGATGAG 
    GCATGTTGGT CTGACCAGGA ATACTGCAAG AAAACTGAGA ATTGGTATTG 
    TCTGGCAAAG ACACGAGCAG AGAGTGAAGC TTTTGAATTT GCAAAACGAA 
    CCGGACTTCA TCTCGTCAGT GTTTGCCCTA CCCTTGTTTT GGGACCTATA 
    CTGCAGCAGA ACACAGTAAA TGCTAGTAGC CTGGTTCTTC TTAAGCTTCT 
    TAAAGAGGGT TTTGAAACAC GTGATAACCA AGAACGTCAT TTGGTAGATG 
    TGCGTGATGT AGCTCAAGCT TTACTCTTGG TTTATGAGAA AGCAGAAGCT 
    GAAGGAAGAT ACATATGTAC ATCCCACACG GTTAAAGAAG AGATTGTGGT 
    TGAGAAGCTG AAGAGTTTTT ATCCACATTA CAACTACCCA AAGAAATACA 
    TTGATGCGGA AGATAGAGTG AAGGTGAGTT CAGAGAAATT GCAGAAGTTG 
    GGTTGGACTT ACCGGCCGTT GGAGGAAACA CTTGTGGATT CTGTTGAGAG 
    CTACCGGAAA GCTAAGCTTG TGGACTGAAA ACTTGGAAAG AAGAGCAAAA 
    TAGTGTTTTA GCTTCATATG TTATAGTTAT AGTGTTCCAT TCTGCACACA 
    CACACACACT CTCTCATCGT TTACTCAATA ATAAGAGTTG TGCATTCACC 
    ATGGATTTCT GAGTTTTTGT TATTTTCTTT TTAGATATCA TTACTTTTAT 
    TACCAATCTA CAATTTTCTT TCCATA

    Gene models with high sequence identity

    1. AT2G33590.1 [+] show detail - NAD(P)-binding Rossmann-fold superfamily protein
      E-value: 0; Score: 100.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMPanther CINNAMOYL-COA REDUCTASE 6.8e-153
    HMMPanther NAD DEPENDENT EPIMERASE/DEHYDRATASE 6.8e-153
    Gene3D NAD(P)-binding domain 4.1e-40
    superfamily NAD(P)-binding domain 5.1e-60
    HMMPfam NAD-dependent epimerase/dehydratase 6.7e-27

    See the detailed result >

    AT2G33590.1

    Model type
    Protein coding
    Short Description
    NAD(P)-binding Rossmann-fold superfamily protein
    Computational Description
    NAD(P)-binding Rossmann-fold superfamily protein; FUNCTIONS IN: coenzyme binding, binding, cinnamoyl-CoA reductase activity, catalytic activity; INVOLVED IN: response to cadmium ion, lignin biosynthetic process; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: NAD-dependent epimerase/dehydratase (InterPro:IPR001509), NAD(P)-binding domain (InterPro:IPR016040); BEST Arabidopsis thaliana protein match is: NAD(P)-binding Rossmann-fold superfamily protein (TAIR:AT2G33600.1); Has 13062 Blast hits to 13044 proteins in 1974 species: Archae - 275; Bacteria - 5592; Metazoa - 467; Fungi - 894; Plants - 2514; Viruses - 60; Other Eukaryotes - 3260 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR