F12341

RIKEN Arabidopsis full-length cDNA overexpressed Arabidopsis lines

Original: F12341

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: F12341

Determination of introduced cDNA(s)

  • RAFL07-09-F22 - RIKEN Arabidopsis Full-length cDNAs - Original: RAFL07-09-F22 - Resource: pda04025

    full reading [+] show sequence

    Nucleotide sequence: RAFL07-09-F22 - full reading 
    ATCTAATATC TCTTTCTCAA TTTCGGTTCC ACTTTCCTTT CGTTTGCAAA 
    AACCCATCCC ATCAAAAATA AACAAGAGGG CCTAAAGAAG AATCCTAAAG 
    ACTTTACGGG TCTTGTTTAG GATAAAAGAA ATGCCTGCCG GTGGATTCGT 
    CGTCGGGGAT GGCCAAAAGG CTTATCCCGG CAAACTCACT CCCTTTGTTC 
    TCTTCACTTG CGTTGTTGCT GCCATGGGCG GTCTCATCTT CGGATACGAT 
    ATCGGAATCT CCGGTGGTGT GACGTCTATG CCGTCTTTCC TCAAGCGATT 
    CTTCCCGTCG GTGTATCGGA AACAACAAGA GGACGCGTCA ACGAACCAGT 
    ACTGTCAGTA CGATAGCCCG ACGCTAACGA TGTTCACATC GTCTCTATAT 
    CTAGCGGCGC TAATTTCGTC GCTGGTGGCT TCCACCGTGA CAAGAAAGTT 
    CGGACGGCGG CTCTCGATGC TCTTCGGCGG CATACTCTTC TGCGCCGGAG 
    CTCTCATCAA TGGTTTCGCC AAACATGTTT GGATGCTCAT CGTCGGTCGT 
    ATCTTGCTTG GTTTCGGTAT CGGTTTCGCT AATCAGGCTG TGCCACTGTA 
    CCTCTCTGAG ATGGCTCCAT ACAAATACAG AGGAGCTTTA AACATTGGTT 
    TCCAGCTCTC AATTACAATC GGAATCCTCG TCGCCGAAGT GCTAAACTAC 
    TTCTTCGCCA AGATCAAAGG CGGTTGGGGA TGGCGGCTCA GTCTCGGAGG 
    CGCGGTGGTT CCTGCCTTGA TCATAACCAT CGGCTCCCTC GTCCTCCCTG 
    ACACTCCCAA TTCAATGATC GAGCGTGGCC AACACGAAGA AGCCAAAACC 
    AAGCTCAGAC GAATCCGTGG TGTCGATGAC GTCAGCCAAG AGTTTGACGA 
    TTTGGTCGCC GCTAGTAAAG AGTCGCAGTC GATAGAGCAC CCGTGGAGAA 
    ACCTCCTCCG CCGCAAGTAC CGACCACATC TCACAATGGC CGTTATGATT 
    CCGTTCTTTC AACAGCTAAC CGGAATCAAT GTGATTATGT TTTACGCTCC 
    GGTTTTGTTC AACACCATTG GTTTCACGAC CGATGCTTCT CTCATGTCCG 
    CTGTGGTCAC TGGCTCGGTT AACGTGGCCG CTACGCTTGT TTCTATCTAC 
    GGTGTTGACA GATGGGGACG TCGGTTTCTC TTTCTTGAAG GTGGTACACA 
    AATGCTTATA TGCCAGGCTG TGGTTGCAGC TTGCATAGGG GCCAAGTTTG 
    GGGTAGACGG GACCCCTGGT GAGCTACCAA AGTGGTATGC TATAGTGGTT 
    GTAACGTTCA TTTGCATCTA TGTGGCGGGT TTTGCGTGGT CGTGGGGCCC 
    ACTAGGGTGG TTAGTACCGA GTGAAATCTT CCCGTTGGAG ATAAGGTCGG 
    CGGCGCAGAG TATCACCGTG TCCGTGAACA TGATCTTCAC GTTCATTATC 
    GCGCAAATCT TCTTGACGAT GCTTTGTCAT TTGAAGTTTG GGTTATTCCT 
    TGTTTTCGCC TTTTTCGTGG TGGTGATGTC GATCTTTGTA TACATTTTCT 
    TGCCGGAGAC GAAAGGGATT CCGATAGAGG AGATGGGTCA AGTGTGGAGG 
    TCACACTGGT ATTGGTCAAG GTTTGTGGAG GATGGTGAGT ATGGGAATGC 
    GCTTGAGATG GGCAAGAACA GTAACCAAGC TGGAACGAAG CATGTTTGAT 
    TTATCATTGT TTTTAATGAG AGTTTTAAGA AAGAAAGAAA AAAGATTTGT 
    AATTTCTAAT GTCGTAAAGG AAAAAGTGTA TTAGCCTAGA TATTTATTGG 
    TGTTTATATA ATTCAATACC ACATGAAGAA ATTATGCATA TGATTCTTCG 
    CAAAAAAAAA AAAAAAA

    Gene models with high sequence identity

    1. AT1G11260.1 [+] show detail - sugar transporter 1
      E-value: 0; Score: 100.00

     

    InterPro Scan Digest

    Program Description E-value
    FPrintScan Sugar/inositol transporter 3.5e-33
    FPrintScan Sugar/inositol transporter 3.5e-33
    FPrintScan Sugar/inositol transporter 3.5e-33
    FPrintScan Sugar/inositol transporter 3.5e-33
    FPrintScan Sugar/inositol transporter 3.5e-33
    superfamily Major facilitator superfamily, general substrate transporter 4.5e-62
    PatternScan Sugar transporter, conserved site 0
    PatternScan Sugar transporter, conserved site 0
    ProfileScan MFS 51.872
    HMMPanther MONOSACCHARIDE TRANSPORTER, PLANT 3.7e-242
    HMMPanther SUGAR TRANSPORTER 3.7e-242
    HMMPfam General substrate transporter 1.6e-143
    HMMTigr Sugar/inositol transporter 5.2e-130

    See the detailed result >

    AT1G11260.1

    Model type
    Protein coding
    Short Description
    sugar transporter 1
    Curator Summary
    Encodes a H+/hexose cotransporter.
    Computational Description
    sugar transporter 1 (STP1); FUNCTIONS IN: carbohydrate transmembrane transporter activity, sugar:hydrogen symporter activity; INVOLVED IN: transport, transmembrane transport; LOCATED IN: nucleus, plasma membrane, vacuole, membrane; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Sugar transporter, conserved site (InterPro:IPR005829), Major facilitator superfamily (InterPro:IPR020846), General substrate transporter (InterPro:IPR005828), Sugar/inositol transporter (InterPro:IPR003663), Major facilitator superfamily, general substrate transporter (InterPro:IPR016196); BEST Arabidopsis thaliana protein match is: sugar transporter protein 12 (TAIR:AT4G21480.1); Has 29569 Blast hits to 28978 proteins in 2050 species: Archae - 503; Bacteria - 13950; Metazoa - 4366; Fungi - 6940; Plants - 2466; Viruses - 2; Other Eukaryotes - 1342 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR