F12343

RIKEN Arabidopsis full-length cDNA overexpressed Arabidopsis lines

Original: F12343

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage
Phenotypes
T1  
cauline leaf (PO:0000013)
  • epinastic (PATO:0000945)
    (Cauline leaf::Shape::epinastic)
rosette leaf (PO:0000014)
  • epinastic (PATO:0000945)
    (Rosette leaf::Shape::epinastic)
stem (PO:0009047)
  • increased thickness (PATO:0000591)
    (Stem::Shape::thick)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: F12343

Determination of introduced cDNA(s)

  • RAFL19-76-B13 - RIKEN Arabidopsis Full-length cDNAs - Original: RAFL19-76-B13 - Resource: pda11559

    full reading [+] show sequence

    Nucleotide sequence: RAFL19-76-B13 - full reading
    GTCATCATCA TCATCACTCT CTCTTCTTCT TCTCTCTATT CCATGGCTTT 
    AGTACGTGAA CGTCGTCAGC TAAATCTCCG TCTTCCTCTT CCTCCAATCT
    CCGACCGCCG CTTCTCCACC TCTTCCTCCT CAGCCACCAC CACCACCGTC
    GCTGGCTGTA ACGGAATCTC CGCTTGTGAT CTCGAGAAAC TCAACGTTCT
    CGGATGCGGA AACGGCGGGA TTGTTTACAA AGTCCGTCAT AAAACCACAT
    CGGAGATCTA CGCTTTGAAA ACAGTTAACG GCGACATGGA TCCGATTTTC
    ACAAGACAGT TGATGCGAGA GATGGAGATT CTCCGCCGTA CAGATTCACC
    GTACGTCGTT AAGTGTCACG GAATCTTCGA GAAACCTGTC GTCGGTGAAG
    TATCGATTCT AATGGAGTAT ATGGACGGCG GAACCCTAGA ATCACTACGC
    GGCGGTGTAA CGGAGCAAAA ACTCGCCGGA TTCGCTAAAC AGATCTTAAA
    AGGATTAAGC TATTTACACG CTCTTAAGAT CGTTCATCGT GATATCAAAC
    CGGCGAATCT TCTTCTCAAT TCGAAAAACG AAGTTAAAAT CGCTGATTTC
    GGAGTTAGTA AGATCTTAGT CCGATCATTA GATTCGTGTA ATTCGTATGT
    TGGTACTTGT GCTTATATGA GTCCGGAGAG GTTTGATTCG GAATCTTCCG
    GTGGAAGCTC TGATATCTAC GCCGGAGATA TCTGGAGTTT CGGATTGATG
    ATGCTTGAGC TTCTCGTTGG TCATTTTCCT TTGCTTCCGC CGGGACAGAG
    ACCTGATTGG GCGACGTTGA TGTGCGCGGT GTGTTTTGGA GAACCGCCGC
    GAGCGCCGGA GGGGTGTTCT GAAGAGTTTA GGAGCTTCGT TGAGTGTTGT
    CTCCGTAAAG ATTCGAGTAA GCGATGGACG GCGCCGCAGC TTCTTGCTCA
    TCCTTTTCTC CGGGAAGATC TTTGATTCGA TTCCTTTTGT AACAGAATCT
    GGAATCTTAA AAGTTGGAAT ATTAGATTTG AAATTATTTT AATTTTTGTA
    GAGTTTTCTG GAGATATTTA TGATCGTGAT TTTTGTACAT ATAATATACT
    CCAGAATGTT AGGGGAAAAT CGTTCTTGT

    Gene models with high sequence identity

    1. AT1G73500.1 [+] show detail - MAP kinase kinase 9
      E-value: 0; Score: 99.91

     

    InterPro Scan Digest

    Program Description E-value
    HMMSmart Serine/threonine-protein kinase domain 5.5e-83
    HMMSmart Tyrosine-protein kinase, catalytic domain 0.000000000000062
    HMMPfam Serine/threonine-protein kinase-like domain 1.2e-58
    ProfileScan Protein kinase, catalytic domain 45.375
    Gene3D no description 0.00075
    Gene3D no description 4.3e-46
    HMMPanther MITOGEN ACTIVATED PROTEIN KINASE KINASE 1.9e-171
    HMMPanther MAPKK-RELATED SERINE/THREONINE PROTEIN KINASE 1.9e-171
    superfamily Protein kinase-like domain 1.8e-74
    PatternScan Protein kinase, ATP binding site 0
    PatternScan Serine/threonine-protein kinase, active site 0

    See the detailed result >

    AT1G73500.1

    Model type
    Protein coding
    Short Description
    MAP kinase kinase 9
    Curator Summary
    member of MAP Kinase Kinase family. Autophosphorylates and also phosphorylates MPK3 and MPK6. Independently involved in ethylene and calmalexin biosynthesis. Induces transcription of ACS2, ACS6, ERF1, ERF2, ERF5, ERF6, CYP79B2, CYP79B3, CYP71A13 and PAD3.
    Computational Description
    MAP kinase kinase 9 (MKK9); FUNCTIONS IN: protein kinase activator activity, MAP kinase kinase activity, kinase activity; INVOLVED IN: in 7 processes; LOCATED IN: mitochondrion; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Protein kinase, catalytic domain (InterPro:IPR000719), Serine/threonine-protein kinase domain (InterPro:IPR002290), Serine/threonine-protein kinase-like domain (InterPro:IPR017442), Protein kinase-like domain (InterPro:IPR011009), Serine/threonine-protein kinase, active site (InterPro:IPR008271); BEST Arabidopsis thaliana protein match is: MAP kinase kinase 7 (TAIR:AT1G18350.1); Has 126854 Blast hits to 125581 proteins in 4823 species: Archae - 172; Bacteria - 14892; Metazoa - 47012; Fungi - 12114; Plants - 31822; Viruses - 500; Other Eukaryotes - 20342 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR