F12345

RIKEN Arabidopsis full-length cDNA overexpressed Arabidopsis lines

Original: F12345

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: F12345

Determination of introduced cDNA(s)

  • RAFL09-91-P07 - RIKEN Arabidopsis Full-length cDNAs - Original: RAFL09-91-P07 - Resource: pda09023

    full reading [+] show sequence

    Nucleotide sequence: RAFL09-91-P07 - full reading
    AAGAGGCGTG ACTTTAAAAA TCTGTAAAAA AGCAAATCCG AAGAAAGAGA 
    GAGAGAGAAG GTGATTTTGA AATTTCAGAT AACGCAGAAT TTTTTTATTC
    TCGCCGGAGT TTTCTCCTCC CACCGTCTCT GATTCTCGTC GCCGCCGTAC
    ACAGTTGTTG TTCTCTGCCG TTTCTGCAAG ATGATTGGAT CGTTTCTTAC
    AAGAGGATTG GTGATGGTGT TGGGCTATGC TTACCCTGCG TATGAATGTT
    ACAAGACTGT TGAAAAGAAT AGGCCTGAAA TCGAGCAACT TCGCTTTTGG
    TGTCAGTACT GGATATTGGT TGCTTGCTTG ACAGTTTTTG AGAGAGTTGG
    TGATGCGTTT GTTTCATGGG TTCCGATGTA CAGTGAAGCT AAGTTGGCAT
    TCTTCATATA CCTGTGGTAT CCTAAAACCA GGGGTACTAC ATATGTCTAC
    GAGTCCTTCT TTAGGCCATA TCTCTCACAG CATGAGAATG ACATAGACCA
    TAGTTTGCTC GAGCTAAGGA CTAGAGCAGG AGATATGGCT GTTATATACT
    GGCAACGAGT TGCAAGTTAT GGTCAGACCA GAATCCTTGA GATTTTGCAG
    TATGTTGCTG CACAATCAAC TCCAAGACCG CAGCCACCTC AGAAACGTGG
    AGGTAGAGCT AATCAAGCTC CTGCGAAGCC TAAGAAAGCC CCTGTTCCCC
    CAATCAGAAC CTGAAGAAGT ATCATTGTCC TCGTCTTCTA GCTCATCTTC
    AAGTGAAAAT GAAGGTAATG AGCCAACCCG TAAAGTATCA GGCCCGTCAA
    GACCTAGACC AACAGTGACA TCTGTACCAG CTGCAGATCC CAAAAACGCG
    GGTACCACTC AGATAGCACA GAAATCAGTA GCTTCCCCAA TTGTGAACCC
    ACCACAGTCA ACCACCCAAG TGGAACCAAT GCAGATAGAA GAAGTGGAAG
    GAGAGGCAGA ATCAGGGAAT GAAAATCCCA ACCCGGAAGG TCCAAAGGAG
    ACAGTGATGG AGGAGACAAT CAGGATGACT CGTGGGAGGT TGAGGAAGAC
    GCGTTCGGAA GAAAGCCGTT GAAAGAAGAA GAAGAAGCTC AATCCAAAAA
    ATTGTTACTT ACTTGCATAA CAGTGGTCTC TCTTCTCTCT TACTCTATGT
    TTCCTGCTTC TAGAATTACG TTGACAGGAA CTAACAACTA GTGGGAATGG
    TTGTATGAAA AGTTAATCTG TTGGTTTTGT TCTAAAAAAA AAAAAAAAA

    Gene models with high sequence identity

    1. AT5G42560.1 [+] show detail - Abscisic acid-responsive (TB2/DP1, HVA22) family protein
      E-value: 0; Score: 99.92

     

    InterPro Scan Digest

    Program Description E-value
    HMMPfam TB2/DP1/HVA22 related protein 7.5e-32
    HMMPanther HVA22-LIKE PROTEIN 1.4e-122
    HMMPanther TB2/DP1/HVA22 related protein 1.4e-122

    See the detailed result >

    AT5G42560.1

    Model type
    Protein coding
    Short Description
    Abscisic acid-responsive (TB2/DP1, HVA22) family protein
    Computational Description
    Abscisic acid-responsive (TB2/DP1, HVA22) family protein; CONTAINS InterPro DOMAIN/s: TB2/DP1/HVA22 related protein (InterPro:IPR004345); BEST Arabidopsis thaliana protein match is: HVA22-like protein H (ATHVA22H) (TAIR:AT1G19950.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR