F12405

RIKEN Arabidopsis full-length cDNA overexpressed Arabidopsis lines

Original: F12405

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: F12405

Determination of introduced cDNA(s)

  • RAFL04-17-L21 - RIKEN Arabidopsis Full-length cDNAs - Original: RAFL04-17-L21 - Resource: pda12208

    full reading [+] show sequence

    Nucleotide sequence: RAFL04-17-L21 - full reading 
    AGAGAGAGAA GAAGGCGATC CATGGCGGAA TCTGTCTTCT CTTGTATACC 
    AGAAGACGTA GTCTTCAACA TCTTCTTCAA GCTCCAAGAT GATCCAAGAA 
    ACTGGGCTCG TCTCGCTTGC GTCTGCACCA AATTCTCCTC AATTGTTCGA 
    AACGTTTGTT GTAAAACTCA GTGCTACTCC GCTATCCCCA CCGTCATCTC 
    CGATCTCCTC CCTCTTCCTC CCTCCGCCGC CGCATCCGCT TCTTCATCCA 
    CCGCGGCGGA TTCGTCTCTT ACTCCTCCCG GTGGTTGGGC TTCTTTATAC 
    AAACTCGCTG TTTGTTGTCC TGGTCTCTTC CACGCTGGAA TTCTCCTCGA 
    AAACTCCGAT TTCGGTTTAG AACGTGAGCT AGGTCCCGAT CAAAACCTCG 
    ATCCGAAACC TACTACGACG GATCTAGCTC TTAACGACGA AGAAGTTTCG 
    AAACCAGTTG GATCTGGTTT AGAAACGACT TCGTTTTGGT CTCTATATGA 
    TGATCTCTAC ACAGATACTA TTCCCGCTCC TCCTCCCGAA GATTCAATCG 
    ACGATCAAGA AGAAGAAATC GAAACGAGTG AGATCAGACC TGGACGAGAT 
    CTTCCGGTAA GGAAACGAAG GAAGATTTGT CGATCTCTAG GATCTCATTT 
    AGCTTCCGGT GGCTGGAACC TTAGCCGTGA ACAAGGCAAC AAGCTTCTCG 
    CGAGTAGATT CCGAGGTGAT TGTCTCTACA TTTGCAATTG GCCTGGGTGT 
    ATTCACGTAG AAGAGAAACG AAATTACATG TTGTTTAGAG GAGTCTTCAA 
    GGATTTCAAA AGGTCTAGAG TTTGGAGAAC GATAAACGAC GGTAATCGGA 
    GTAAGACCTC GGGTTTGAAA TGCGCGTTTT GTTTGTGCGA TGAGACTTGG 
    GATTTGCATT CATCGTTTTG TTTGAGAAGA GTGTTTGGGT TTCATGATGA 
    TGGTGAACCA GTTGTGAGAG CTTATGTTTG TGAGAATGGT CATGTCTCTG 
    GTGCTTGGAC TGCTTTACCT CTCTACACTT GATAGCTCAC TAGAGAGGAC 
    AGGTCTTTCA TTCTTCTTCC ACGGTCTCAA GTCTCAATCT TGTTTGATGT 
    ATTTGTAGGA ATAGTGTCAT TGTGTTTCAA ATTCTGGTTA ATGTTTAAGT 
    AATGGTTGAA GAAAATTGGC TCAACATATT GTGGTTGTTT TGTTTCAATG 
    TTGACAACAT ATTAGACTC

    Gene models with high sequence identity

    1. AT4G02440.1 [+] show detail - F-box family protein
      E-value: 0; Score: 100.00

     

    InterPro Scan Digest

    See the detailed result >

    AT4G02440.1

    Model type
    Protein coding
    Short Description
    F-box family protein
    Curator Summary
    EID1 is an F-box protein that functions as a negative regulator in phytochrome A (phyA)-specific light signalling. Expressed at all stages of plant development independently of light conditions, localizes to the nucleus, and forms nuclear speckles under continuous far-red light. Forms stable dimeric and trimeric complexes with several ASK proteins and Cullin1 in yeast and in planta.
    Computational Description
    EMPFINDLICHER IM DUNKELROTEN LICHT 1 (EID1); FUNCTIONS IN: ubiquitin-protein ligase activity; INVOLVED IN: photoperiodism, flowering, red, far-red light phototransduction, leaf development, regulation of photomorphogenesis; LOCATED IN: nucleus; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; Has 121 Blast hits to 91 proteins in 15 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 121; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR