F12429

RIKEN Arabidopsis full-length cDNA overexpressed Arabidopsis lines

Phenotypes

Morphological phenotypes

Generation	Anatomical entity /structure development stage	Phenotypes
T1
	whole plant (PO:0000003)	decreased height (PATO:0000569) (Adult plant::Plant height::short)
	rosette leaf (PO:0000014)	decreased size (PATO:0000587) (Rosette leaf::Shape::small) present in greater numbers in organism (PATO:0000470) (Rosette leaf::Number::many)
	fruit (PO:0009001)	decreased length (PATO:0000574) (Silique::Shape::short)
	stem (PO:0009047)	decreased thickness (PATO:0000592) (Stem::Shape::thin) present in greater numbers in organism (PATO:0000470) (Stem::Number::many)
T2
	rosette leaf (PO:0000014)	epinastic (PATO:0000945) (Rosette leaf::Shape::epinastic) abnormal (PATO:0000460) (Rosette leaf::Others) abnormal (PATO:0000460) (Rosette leaf::Others)
	fruit (PO:0009001)	decreased length (PATO:0000574) (Silique::Shape::short) decreased thickness (PATO:0000592) (Silique::Shape::thin)
	stem (PO:0009047)	decreased thickness (PATO:0000592) (Stem::Shape::thin)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: F12429

Determination of introduced cDNA(s)

RAFL09-75-K21 - RIKEN Arabidopsis Full-length cDNAs - Original: RAFL09-75-K21 - Resource: pda17834

full reading [+] show sequence

CCCTTTTAGA AAGAAGACTC TCTTTTAAGT TTGGGTGTTA ATTCTAGGGT 
TTCCATTAAC AATGGCAGAT TCTTCTTCTG CTTCTTACAT TCACATGGTG 
CAGCACATGA TAGAGAAATG TTTGATCTTC CATATGAGCA AAGAAGAGTG 
TGTGGAAGCT CTCTCTAAGC ATGCAAACAT CACTCCTGTC ATCACCTCTA 
CTGGTTTTAA TTCCTCTCTC TCTCTCTCCT CTTTTTTAAT ACTTTTTACC 
TTTCCGTAAT CCTTATAAAC ACACAAACAT ATCTGTACCT ATGTACTCTC 
TAACGGGATT AATTATATGT ATAAATTATG GAGCTATCAT CATATTATGA 
TACCATCATT TAGAATTTGA TCATGTAATA TGTACTTAAT TAGCTACAGA 
TAGGATCTAG CGTGATGGAT CGATCTTCAA TATTTCTATT CATATAAGTG 
CTCATGCATA ATCAAATTAA TGATTATATA CACTGACTTG ACTACCTGGC 
GACTAGAACT TATACATATA CAAAAAAAGC CAAAGAAAAT ATAAAAATCC 
TTGCAACATA TATATCCGGC CTATATATTT TGTTATCATA ATATTAATGA 
ATTGGAACAA AATAAATGAC AGTGTGGAAG GAGCTGGAGA AAGAGAACAA 
GGAATTCTTC AAGGCGTATG AGGAGAGGCA AAGCAAACAA GAGCAAATGT 
CGGAGGAAGA GACAAACCAG ATGATCCAGA AGATTATCTC GGATTCATCT 
AAAGAATCCG ACGACTGATC GCGATGTTCG ATCGTTAGAT TTCGAAAACC 
TTATAGTTTA TATATATGAA TCTCATGAAA ACGATTTATC CCTGACGCAT 
GCATGTTTAT AAGTAAATCG TTTTTTCATC TTAGCATCGG TCCAACAAGC 
AAGACAGCAA AAAAAGGAGT GATGACACTC TTTTTGGTAC GTTATACGTA 
CGTGGTCCAC ATAATATTGC CTCTGTTTAA TTATATATAA TGAAACGGAC 
GCTAGCTCAT ACATGGATCG ATGGTGTGGT GTTTTAATTG AATGTATCGT 
GTGTATATAT TTTCAAATAA ACTATTTATT TCGGGTTAAA AAAAAAA

Gene models with high sequence identity

AT3G55240.1 [+] show detail - Plant protein 1589 of unknown function
E-value: 0; Score: 100.00

InterPro Scan Digest

Program	Description	E-value
HMMPfam	Conserved hypothetical protein CHP01589, plant	6.59999999999999e-05
HMMTigr	Conserved hypothetical protein CHP01589, plant	4.3e-08
HMMPfam	Conserved hypothetical protein CHP01589, plant	3.1e-17

See the detailed result >

AT3G55240.1

Model type: Protein coding
Short Description: Plant protein 1589 of unknown function
Curator Summary: Overexpression leads to PEL (Pseudo-Etiolation in Light) phenotype.
Computational Description: FUNCTIONS IN: molecular_function unknown; INVOLVED IN: developmental process; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: Conserved hypothetical protein CHP01589, plant (InterPro:IPR006476); BEST Arabidopsis thaliana protein match is: Plant protein 1589 of unknown function (TAIR:AT3G28990.1); Has 220 Blast hits to 220 proteins in 21 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 215; Viruses - 0; Other Eukaryotes - 5 (source: NCBI BLink).
Link: InterPro Scan - TAIR