F12429

RIKEN Arabidopsis full-length cDNA overexpressed Arabidopsis lines

Original: F12429

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage
Phenotypes
T1  
whole plant (PO:0000003)
  • decreased height (PATO:0000569)
    (Adult plant::Plant height::short)
rosette leaf (PO:0000014)
  • decreased size (PATO:0000587)
    (Rosette leaf::Shape::small)
  • present in greater numbers in organism (PATO:0000470)
    (Rosette leaf::Number::many)
fruit (PO:0009001)
  • decreased length (PATO:0000574)
    (Silique::Shape::short)
stem (PO:0009047)
  • decreased thickness (PATO:0000592)
    (Stem::Shape::thin)
  • present in greater numbers in organism (PATO:0000470)
    (Stem::Number::many)
T2  
rosette leaf (PO:0000014)
  • epinastic (PATO:0000945)
    (Rosette leaf::Shape::epinastic)
  • abnormal (PATO:0000460)
    (Rosette leaf::Others)
  • abnormal (PATO:0000460)
    (Rosette leaf::Others)
fruit (PO:0009001)
  • decreased length (PATO:0000574)
    (Silique::Shape::short)
  • decreased thickness (PATO:0000592)
    (Silique::Shape::thin)
stem (PO:0009047)
  • decreased thickness (PATO:0000592)
    (Stem::Shape::thin)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: F12429

Determination of introduced cDNA(s)

  • RAFL09-75-K21 - RIKEN Arabidopsis Full-length cDNAs - Original: RAFL09-75-K21 - Resource: pda17834

    full reading [+] show sequence

    Nucleotide sequence: RAFL09-75-K21 - full reading
    CCCTTTTAGA AAGAAGACTC TCTTTTAAGT TTGGGTGTTA ATTCTAGGGT 
    TTCCATTAAC AATGGCAGAT TCTTCTTCTG CTTCTTACAT TCACATGGTG
    CAGCACATGA TAGAGAAATG TTTGATCTTC CATATGAGCA AAGAAGAGTG
    TGTGGAAGCT CTCTCTAAGC ATGCAAACAT CACTCCTGTC ATCACCTCTA
    CTGGTTTTAA TTCCTCTCTC TCTCTCTCCT CTTTTTTAAT ACTTTTTACC
    TTTCCGTAAT CCTTATAAAC ACACAAACAT ATCTGTACCT ATGTACTCTC
    TAACGGGATT AATTATATGT ATAAATTATG GAGCTATCAT CATATTATGA
    TACCATCATT TAGAATTTGA TCATGTAATA TGTACTTAAT TAGCTACAGA
    TAGGATCTAG CGTGATGGAT CGATCTTCAA TATTTCTATT CATATAAGTG
    CTCATGCATA ATCAAATTAA TGATTATATA CACTGACTTG ACTACCTGGC
    GACTAGAACT TATACATATA CAAAAAAAGC CAAAGAAAAT ATAAAAATCC
    TTGCAACATA TATATCCGGC CTATATATTT TGTTATCATA ATATTAATGA
    ATTGGAACAA AATAAATGAC AGTGTGGAAG GAGCTGGAGA AAGAGAACAA
    GGAATTCTTC AAGGCGTATG AGGAGAGGCA AAGCAAACAA GAGCAAATGT
    CGGAGGAAGA GACAAACCAG ATGATCCAGA AGATTATCTC GGATTCATCT
    AAAGAATCCG ACGACTGATC GCGATGTTCG ATCGTTAGAT TTCGAAAACC
    TTATAGTTTA TATATATGAA TCTCATGAAA ACGATTTATC CCTGACGCAT
    GCATGTTTAT AAGTAAATCG TTTTTTCATC TTAGCATCGG TCCAACAAGC
    AAGACAGCAA AAAAAGGAGT GATGACACTC TTTTTGGTAC GTTATACGTA
    CGTGGTCCAC ATAATATTGC CTCTGTTTAA TTATATATAA TGAAACGGAC
    GCTAGCTCAT ACATGGATCG ATGGTGTGGT GTTTTAATTG AATGTATCGT
    GTGTATATAT TTTCAAATAA ACTATTTATT TCGGGTTAAA AAAAAAA

    Gene models with high sequence identity

    1. AT3G55240.1 [+] show detail - Plant protein 1589 of unknown function
      E-value: 0; Score: 100.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMPfam Conserved hypothetical protein CHP01589, plant 0.0000659999999999999
    HMMTigr Conserved hypothetical protein CHP01589, plant 0.000000043
    HMMPfam Conserved hypothetical protein CHP01589, plant 3.1e-17

    See the detailed result >

    AT3G55240.1

    Model type
    Protein coding
    Short Description
    Plant protein 1589 of unknown function
    Curator Summary
    Overexpression leads to PEL (Pseudo-Etiolation in Light) phenotype.
    Computational Description
    FUNCTIONS IN: molecular_function unknown; INVOLVED IN: developmental process; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: Conserved hypothetical protein CHP01589, plant (InterPro:IPR006476); BEST Arabidopsis thaliana protein match is: Plant protein 1589 of unknown function (TAIR:AT3G28990.1); Has 220 Blast hits to 220 proteins in 21 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 215; Viruses - 0; Other Eukaryotes - 5 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR