F12438

RIKEN Arabidopsis full-length cDNA overexpressed Arabidopsis lines

Original: F12438

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T2 seed (PO:0009010)
  • increased size (PATO:0000586)
    (Seed::Shape::large)
  • increased length (PATO:0000573)
    (Seed::Shape::long)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: F12438

Determination of introduced cDNA(s)

  • RAFL09-31-J04 - RIKEN Arabidopsis Full-length cDNAs - Original: RAFL09-31-J04 - Resource: pda05864

    full reading [+] show sequence

    Nucleotide sequence: RAFL09-31-J04 - full reading 
    CCGTTCGTCC TTCTCACAAG TCTGATTGCG GAAAAAGCAG AGAGAGAGAG 
    AAAGTTCGAG CGGAAGAGAA GCGGAAAGCT CGAGGAGTCA TCAATGGTGA 
    CGGACGATAG CAACTCCTCT GGACGAATCA AGTCTCATGT AGATGATGAT 
    GATGATGGTG AAGAAGAAGA AGATAGACTC GAGGGTTTGG AAAACAGATT 
    AAGTGAGCTT AAAAGGAAAA TTCAAGGAGA AAGAGTTAGG TCTATTAAAG 
    AGAAATTTGA GGCTAATAGA AAGAAAGTGG ATGCTCATGT TTCTCCCTTT 
    TCATCTGCTG CATCGAGCCG AGCTACCGCA GAGGATAATG GAAATAGCAA 
    TATGCTTTCT TCGAGAATGA GAATGCCACT CTGCAAGTTA AATGGTTTTT 
    CTCATGGTGT GGGAGATAGA GACTATGTTC CTACTAAGGA TGTTATATCA 
    GCAAGTGTCA AGCTTCCTAT TGCTGAGAGA ATACCGCCAT ACACTACCTG 
    GATATTTTTG GACAGAAATC AAAGAATGGC TGAAGATCAG TCTGTGGTTG 
    GTCGAAGACA AATCTACTAT GAACAACATG GTGGTGAGAC GCTAATATGC 
    AGCGATAGTG AGGAAGAACC AGAACCTGAG GAGGAAAAAC GTGAATTTTC 
    CGAGGGTGAA GATTCCATTA TATGGTTAAT TGGGCAGGAG TATGGCATGG 
    GTGAGGAAGT GCAGGATGCC CTTTGCCAGT TGCTAAGCGT AGATGCTTCT 
    GATATCCTAG AAAGATACAA TGAGCTCAAG TTGAAGGATA AGCAGAATAC 
    CGAGGAATTT TCTAATTCCG GATTCAAGCT GGGAATATCT CTGGAAAAGG 
    GCCTTGGTGC AGCTCTAGAT TCTTTTGATA ATCTTTTCTG CCGCCGTTGC 
    TTGGTATTTG ACTGTCGTCT GCATGGATGT TCTCAGCCTT TGATTAGTGC 
    TAGTGAAAAA CAGCCTTATT GGTCTGATTA TGAAGGTGAT AGGAAACCCT 
    GCAGCAAACA TTGTTACCTC CAGCTCAAGG CGGTCAGAGA AGTACCAGAA 
    ACATGCAGTA ATTTTGCATC TAAAGCAGAA GAGAAAGCTT CAGAAGAGGA 
    ATGCAGCAAG GCTGTCTCCT CTGATGTTCC CCATGCTGCT GCTAGTGGTG 
    TCAGTCTGCA AGTTGAGAAG ACTGATATTG GTATCAAGAA TGTAGATTCA 
    TCCTCTGGTG TAGAACAAGA GCATGGAATT AGAGGAAAGC GTGAGGTCCC 
    AATTCTAAAA GACTCCAATG ATCTGCCTAA TTTATCGAAC AAGAAACAGA 
    AGACCGCAGC CTCAGATACA AAAATGTCAT TTGTTAATTC TGTCCCTAGC 
    TTAGATCAGG CATTGGATAG CACAAAGGGT GATCAAGGTG GAACAACTGA 
    CAATAAAGTA AACAGAGACT CAGAAGCTGA TGCAAAAGAA GTAGGTGAGC 
    CTATTCCAGA CAATTCGGTC CATGATGGTG GTTCCTCAAT TTGTCAGCCA 
    CACCATGGTA GTGGAAACGG AGCAATAATC ATTGCAGAAA TGTCTGAGAC 
    AAGTCGACCA TCTACAGAGT GGAATCCTAT CGAGAAGGAT CTTTACTTGA 
    AGGGAGTCGA AATCTTTGGA AGAAACAGCT GTCTTATTGC AAGAAACCTG 
    CTTTCTGGCT TGAAGACATG CCTAGATGTG TCCAATTACA TGCGTGAAAA 
    CGAAGTTTCA GTTTTTCGAA GATCTAGTAC CCCAAATTTG CTGTTGGATG 
    ATGGCAGGAC TGACCCAGGG AATGATAATG ATGAGGTGCC TCCAAGGACA 
    AGATTGTTCC GTAGAAAAGG CAAAACCCGG AAGCTAAAAT ACTCTACAAA 
    GTCTGCTGGT CATCCGTCTG TCTGGAAAAG AATAGCTGGT GGCAAAAACC 
    AGTCCTGTAA ACAATACACG CCGTGTGGAT GCCTGTCAAT GTGCGGAAAG 
    GATTGCCCTT GTCTAACTAA TGAAACTTGC TGCGAGAAAT ATTGCGGGTG 
    CTCAAAAAGC TGTAAAAATC GTTTCCGAGG ATGTCATTGT GCAAAGAGTC 
    AATGCAGAAG TAGGCAGTGT CCCTGCTTTG CTGCTGGCAG AGAATGTGAT 
    CCAGATGTTT GCAGAAATTG CTGGGTTAGT TGTGGAGATG GTTCTCTCGG 
    TGAAGCACCA AGACGCGGAG AAGGGCAATG CGGAAACATG AGACTTCTCC 
    TGAGGCAACA ACAGAGGATC CTATTGGGAA AGTCTGATGT TGCTGGATGG 
    GGTGCTTTTC TAAAGAACTC GGTCAGCAAA AATGAATACC TTGGAGAATA 
    CACCGGTGAA TTGATCTCAC ACCATGAGGC GGATAAGCGT GGGAAAATAT 
    ATGACCGGGC AAATTCGTCC TTCCTCTTTG ACTTGAATGA TCAGTACGTC 
    CTCGATGCTC AACGCAAAGG TGACAAGCTG AAATTTGCCA ATCACTCAGC 
    TAAACCCAAT TGCTACGCTA AGGTGATGTT TGTAGCAGGA GATCACAGGG 
    TCGGGATTTT TGCAAACGAA CGAATAGAAG CTAGCGAAGA GCTTTTCTAT 
    GACTATAGAT ATGGACCAGA CCAAGCACCA GTGTGGGCTC GCAAACCTGA 
    AGGCTCCAAG AAAGATGATT CAGCCATTAC TCATCGTAGA GCCAGAAAGC 
    ACCAATCTCA TTGATGATTA CTGGCTAAGA GAAGTAACTT TTATAAAAAT 
    AACTTATAGA GTTGTGAGAG ATGATATTTG AAGTTTGATA ACTTAAGCTT 
    GTCTTTATTA ATTAATTATT ATAGAGTTGA GATTTTATTC T

    Gene models with high sequence identity

    1. AT4G02020.1 [+] show detail - SET domain-containing protein
      E-value: 0; Score: 99.96

     

    InterPro Scan Digest

    Program Description E-value
    superfamily SET domain 5e-61
    Coil coiled-coil 0
    Coil coiled-coil 0
    ProfileScan SET domain 30.465
    HMMPanther ENHANCER OF ZESTE, EZH 2.7e-208
    HMMPanther SET DOMAIN PROTEINS 2.7e-208
    HMMPfam SET domain 3.8e-17
    HMMSmart SANT, DNA-binding 0.0066
    HMMSmart SET domain 1.4e-33

    See the detailed result >

    AT4G02020.1

    Model type
    Protein coding
    Short Description
    SET domain-containing protein
    Curator Summary
    Encodes a polycomb group protein. Forms part of a large protein complex that can include VRN2 (VERNALIZATION 2), VIN3 (VERNALIZATION INSENSITIVE 3) and polycomb group proteins FERTILIZATION INDEPENDENT ENDOSPERM (FIE) and CURLY LEAF (CLF). The complex has a role in establishing FLC (FLOWERING LOCUS C) repression during vernalization. Performs a partially redundant role to MEA in controlling seed initiation by helping to suppress central cell nucleusendosperm proliferation within the FG.
    Computational Description
    SWINGER (SWN); CONTAINS InterPro DOMAIN/s: SANT, DNA-binding (InterPro:IPR001005), SET domain (InterPro:IPR001214); BEST Arabidopsis thaliana protein match is: SET domain-containing protein (TAIR:AT2G23380.1); Has 5041 Blast hits to 4734 proteins in 465 species: Archae - 0; Bacteria - 399; Metazoa - 2132; Fungi - 472; Plants - 1030; Viruses - 0; Other Eukaryotes - 1008 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR