F12450

RIKEN Arabidopsis full-length cDNA overexpressed Arabidopsis lines

Original: F12450

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T1  
cauline leaf (PO:0000013)
  • epinastic (PATO:0000945)
    (Cauline leaf::Shape::epinastic)
rosette leaf (PO:0000014)
  • decreased size (PATO:0000587)
    (Rosette leaf::Shape::small)
  • increased width (PATO:0000600)
    (Rosette leaf::Shape::wide)
fruit (PO:0009001)
  • increased length (PATO:0000573)
    (Silique::Shape::long)
stem (PO:0009047)
  • abnormal (PATO:0000460)
    (Stem::Others)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: F12450

Determination of introduced cDNA(s)

  • RAFL09-14-J21 - RIKEN Arabidopsis Full-length cDNAs - Original: RAFL09-14-J21 - Resource: pda01771

    full reading [+] show sequence

    Nucleotide sequence: RAFL09-14-J21 - full reading 
    AAGTTGAAAT TCTGATTAGG GTCTTCCTCG ATTCGCTTTT GGTGAATCAA 
    ATTTCTTTAA TTTCAGTGAA TACGCTTTTG ACAGGAGGAC CATACTAAGT 
    CTTGGGAAAA CCCTCTTCAT AGTGGGTTTG ATCTACAATG ATGTATCAGA 
    CAATTCCCAC GGCACCAACC ATTCGTGGTG GAACTCCAAC AGAGAGTGGT 
    GATTACGTTG TGACTTTGGA TCAGATTCCA CGGTGGAGTG ATGTTGAGCA 
    GAGATCATCT TTGGAGGATG AGACAGGAGA TCCAGAACAT TCGAATCCGC 
    GCTACGCAAA CCCTTTGGCT TCGTCTTCCG AAGCAGGGAG CAGCGGGAAT 
    GGGATGGTAT CTAAGTTTCC TGTTGATCAC GAGATAAACT CTAGAATATA 
    CCTTTGGAGA GGGGAACCTT GGAACCTTGA GGTTGATGCT GTTGTAAATT 
    CGACAAATGA GAACTTGGAT GAGGCACATA GCAGTCCTGG TCTACATGTG 
    GCTGCTGGAC CTGGCCTTGC AGAGCAATGT GCTACATTGG GTGGATGCAG 
    GACAGGGATG GCGAAAGTAA CAAATGCCTA TGATCTACCA GCGAGGAGGG 
    TTATCCATAC AGTAGGACCC AAGTATGCAG TAAAGTATCA TACAGCTGCT 
    GAGAATGCTC TAAGTCACTG CTATAGATCT TGTCTGGAAC TTCTCATAGA 
    TAGTGGGCTA CAAAGTATCG CTCTGGGCTG TATATACACA GAAGCCAAAA 
    ACTATCCCCG AGAACCAGCT GCTCATGTTG CCATAAGAAC TGTTCGCCGC 
    TTTCTAGAGA AGCAAAAGGA TAAAATCAGT GCCGTTGTTT TCTGTACCAC 
    CACATCCTCT GATACGGAGA TATACAAACG ATTACTTCCA CTTTACTTTC 
    CTCGAGATGA ACATGAGGAA GAGGTTGCCA TATCAAAGCT CCCGGCTGAT 
    GTTGGAGATG AAAATGGTGA GACGGTTATA GACGAACGTA AAATCAGAAT 
    ACAGGCGCTG CCAAATAAAC CTCCACCCAG ATCTTTTCCA ACTCCACTCG 
    AGCGCCCTTC TACTGATCTT ACTTTGTTAC GCAGGAACTC GAATCATCTT 
    GATTCGTATT TGGATCCTGC CTTCATGTCC TTGATTAAGG ATCCAGATGA 
    AAGGCGCAAA GAACAATGGG AGAAGACTGC ACAAGCACAA AGTGGATTCA 
    ATTTTGTTAA ATTGCTAGGA TTTGGTGATC TAGGAGGACC CCCTCTCTCT 
    GCTGCAGAGG AATACTCACT TCATTCGCGA TACCTAGCGA AAGCTAATTC 
    AATCAACCTT TCCGAGATTG CAGAGATGAA AATTGTCTAT CGTGGTGGTG 
    TTGACACCGA GGGTCATCCT GTAATGGTTG TTGTAGGAGC TCACTTTTTG 
    CTGCGATGTC TTGATCTGGA GCGTTTTGTA CTTTATGTTA TTAAGGAATT 
    TGAACCTGTG ATACAAAAGC CTTATTCGAT TGTCTACTTT CATTCTGCAG 
    CATCGTTACA AGTCCAACCA GATTTGGGAT GGATGAAAAG ATTAGAACAG 
    ATACTTGGTC GAAAACACCA GCGTAACCTT CAGGCAATCT ATGTTCTTCA 
    TCCAACTTTC CACTTGAAGG CTACAATCTT AACGATGCAA TTTTTCGTGG 
    ATAATGTGGT ATGGAAGAAA GTTGTATATG CAGACCGACT TCTGCAGCTG 
    TTCAAATACG TTCCTCGTGA GCAGCTGACA ATCCCAGACT TTGTTTTCCA 
    GCATGATCTT GAAGTTAACG GAGGAAAAGG TCTAATCGTT GACCCAAGAA 
    CAAAATACGT TTATCAACGG CCATGAACCA AAATCAAAGA CCGTTACTTT 
    ATTCAGTACT TGTATGTTTG CTTGTGAAAT ATTTCTTCAT TCTTTCATGC 
    TTATCTTCTC AAGATGATCC TGGGAGCAAA TAAAGTCTTC TTCTTCTTCT 
    AATGTAATCT AAAGTTTGAA TCTTTTTGTT TATAAATCCA TTTTCTCAGC 
    ACAC

    Gene models with high sequence identity

    1. AT1G69340.1 [+] show detail - appr-1-p processing enzyme family protein
      E-value: 0; Score: 100.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMSmart Appr-1-p processing 0.000000033
    HMMSmart Cellular retinaldehyde-binding/triple function, C-terminal 0.00000064
    HMMPanther GANGLIOSIDE INDUCED DIFFERENTIATION ASSOCIATE 0
    HMMPanther GANGLIOSIDE INDUCED DIFFERENTIATION ASSOCIATE 0
    Gene3D no description 7.8e-44
    ProfileScan Appr-1-p processing 22.212
    HMMPfam Appr-1-p processing 6.6e-24
    superfamily Macro domain-like 1e-40
    superfamily Cellular retinaldehyde-binding/triple function, C-terminal 0.000000000000022

    See the detailed result >

    AT1G69340.1

    Model type
    Protein coding
    Short Description
    appr-1-p processing enzyme family protein
    Computational Description
    appr-1-p processing enzyme family protein; CONTAINS InterPro DOMAIN/s: Cellular retinaldehyde-binding/triple function, C-terminal (InterPro:IPR001251), Appr-1-p processing (InterPro:IPR002589); BEST Arabidopsis thaliana protein match is: appr-1-p processing enzyme family protein (TAIR:AT2G40600.1); Has 3597 Blast hits to 3538 proteins in 1210 species: Archae - 64; Bacteria - 1971; Metazoa - 984; Fungi - 140; Plants - 224; Viruses - 8; Other Eukaryotes - 206 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR