F12514

RIKEN Arabidopsis full-length cDNA overexpressed Arabidopsis lines

Original: F12514

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: F12514

Determination of introduced cDNA(s)

  • RAFL05-13-A10 - RIKEN Arabidopsis Full-length cDNAs - Original: RAFL05-13-A10 - Resource: pda02557

    full reading [+] show sequence

    Nucleotide sequence: RAFL05-13-A10 - full reading 
    ACTCTCTCAC ACTCGTTGAC CAAAAAAAAA ACTCTCTCTT TCACTGAGAA 
    ATGCTCTGCT TCACTCATGT CCCACCTCTT CCTCTGTTCT CCACCTCCGG 
    TATCTATCTT CCGGCCTCCA GACGATTCAC TAGTTTCAGG ATTAGAATGT 
    CTTCTTCTTC CTCCATCGAT TCTGTTCCTC CTCCACCGGA TAACGCAATC 
    GTCCTTGGTT GTGGTGGAAT CGCTGTAGAT TTCTTAGCGA CGGTGGATTC 
    TTATCCTCAA GCTGACGACA AGATCCGAAG CACTAGCCTA AAGGTGCAAG 
    GAGGTGGAAA TGCTGCAAAT GCGTTAACTT GTGCTGCTCG TTTGGGATTG 
    AATTCGAGAC TGATTAGTAA GGTAGCGAAT GACTCTCAAG GAAAAGGCAT 
    GTTGGAGGAG CTTGAAGCTG ATGGTGTGGA TACTTCTTTT ATTGTGGTCT 
    CTAAAGAGGG TAATTCACCA TTTACCTATA TCTTAGTTGA CAACCAAACG 
    AAAACGCGTA CTTGTATTCA CACGCCTGGA GACCCACCTA TGTTACCAAC 
    TGACCTTTCT CAATCGAGTA TGCTATCAGC GCTAGACCGA GCCAGCATTG 
    TATACTTTGA TGTAAGATTA CACGAAACAG CTTTGGTTAT TGCAAAAGAG 
    GCAAGTCGCA AGAAGATACC TATTTTAGTT GATACAGAGA AAAAAAGAGA 
    TGGTTTAGAT GATCTCTTGC CATTCGCCGA CTACGTTGTC TGTCCAGAAA 
    ATTTCCCTCA GACATGGACA GAAGTGTCTT CAACTCCTGG TGCACTTGTT 
    TCCATGTTGT TGAGATTGCC TAAACTGAAA TTTGTGATCG TGACCTCAGG 
    TGAACATGGG TGCTTAATGG TTCAAAGAGC TTCAAAAGCA GAAGTATTTG 
    AATCTCAAGA GACAGACATT GAAAGCTTGT TGGAGACACT GAAGCATAGA 
    AAAGACTCAA CGACAACATT TCCAACATGT GTTTCATCGG AGACAACAAA 
    GCTGAAGGCC AACGGGGTAG GAACAATGAC CGGAAGATTG TTTCTCGGAA 
    CAGCGGAGAA AATTCCTCCA GAAGAGCTTG TAGACACCAC TGGTGCTGGC 
    GATGCATTCA TAGGAGCTGT TCTATATGCC ATATGCGCCG GCATGCCCCC 
    AGAGAAAATG TTACCATTTG CTGCTCAAGT GGCTGGTTGC AGCTGCCGGG 
    CTTTGGGAGC TCGCACGGGT CTTCCTCACC GTACAGATCC TAGACTTGTA 
    CCCTTTCTGG TTTGACACTC TCTGTGTTCC TTTGTCAACC TTTCTGAGTC 
    ACTACTTTAC TCCATTGCCC ACTTTCATAT ATTTTGAATG TTCTTCTACT 
    TATTAGATGA AATAAAAGAC ATGGTGGTAT GCAT

    Gene models with high sequence identity

    1. AT4G28706.2 [+] show detail - pfkB-like carbohydrate kinase family protein
      E-value: 0; Score: 100.00

     

    InterPro Scan Digest

    Program Description E-value
    Gene3D no description 3.3e-53
    FPrintScan Ribokinase 1.3e-06
    FPrintScan Ribokinase 1.3e-06
    FPrintScan Ribokinase 1.3e-06
    superfamily Ribokinase-like 1.4e-64
    PatternScan Carbohydrate/puine kinase, PfkB, conserved site 0
    HMMPanther UNCHARACTERIZED 5.6e-227
    HMMPanther SUGAR KINASE RELATED 5.6e-227
    HMMPfam Carbohydrate/purine kinase 5.5e-40

    See the detailed result >

    AT4G28706.2

    Model type
    Protein coding
    Short Description
    pfkB-like carbohydrate kinase family protein
    Computational Description
    pfkB-like carbohydrate kinase family protein; FUNCTIONS IN: kinase activity, ribokinase activity; INVOLVED IN: D-ribose metabolic process; LOCATED IN: chloroplast; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Carbohydrate/purine kinase (InterPro:IPR011611), Ribokinase (InterPro:IPR002139), Carbohydrate/puine kinase, PfkB, conserved site (InterPro:IPR002173); BEST Arabidopsis thaliana protein match is: pfkB-like carbohydrate kinase family protein (TAIR:AT5G43910.2); Has 7438 Blast hits to 7159 proteins in 1790 species: Archae - 225; Bacteria - 5592; Metazoa - 327; Fungi - 119; Plants - 278; Viruses - 0; Other Eukaryotes - 897 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR