F12516

RIKEN Arabidopsis full-length cDNA overexpressed Arabidopsis lines

Original: F12516

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: F12516

Determination of introduced cDNA(s)

  • RAFL15-14-A05 - RIKEN Arabidopsis Full-length cDNAs - Original: RAFL15-14-A05 - Resource: pda19175

    full reading [+] show sequence

    Nucleotide sequence: RAFL15-14-A05 - full reading
    TGGTTTTGTT TTTGAATCAG ATCCTTATTC TTGACCTTTC GATCAGATTC 
    ATGGCAACGA CTCAATCACA CACCTCAGAT CTTACTTCAG AGGAGCAACC
    TGCTAGTTTG GACATCATGA AGGAGCAGAC TGTCCCGGCA AACAACGAGA
    CATCAGCCTC TTTTAAGTCC TCCCAGGAAG CTCCAGTTGT AGTTCATCCA
    GCAAAAGTTG CTCCACTTAC TGGACCTTAT GGTTTAGCCG GTGATTTTGC
    CGGACACTTA CCTAGCAGCA TCCTCTCTCC TCAAGCACAA GGCTTTTACT
    ATAGAGGTTA TGAAAACCCC ACAGGCGAAT GGGACGAGTA TTCCTCGTAT
    GTCAATGTTG AAGGATTGGA CATCACATCT CCTGTTGGCT TCAATGAGAA
    TGCTTCTCTG GTCTACCAAA CGGGATATGG ATACAACCCT CAAATGCCAT
    ATGGGCCATA TTCCCCTGCA GCAAGTCCCT TGCCTTCTGA GGGACAGTTG
    TATTCTCCAC AACAGTTTCC GTTTTCAGGG GCATCACCGT ATTACCAGCA
    GGTAGTTCCT CCTAGCATGC AATATATTAC TTCTCCAACT CAGCCCGAGC
    TCACCAGCCT TGTCGGTGTT GACCAACAAG GTGATAACAT CGGACCACGC
    CAATCCTACC ATCCTCATCC CATTGGACCG TTTAATGGAA ACCAGCCAAA
    CCTTGGTTTT CCTGAATGGC AGCAAGGTTT TGACGGGGGA ATATGGTCGG
    ATTGGTCCAA GCCTTCTGAT ATGCACAGGC ATTCTTCTTC TATTTCTCCG
    GCTTTATCTC CTCAGCCACT CGGCTCATAT GGATCATATG GCCAGAACAT
    ACCCATGGGG TCACAGCGAC AGAGATCATT TTACGGTTTT GGATCTGGTT
    CGAACTCTTA TAACAGAGGT TATATGCATA GTGGTGGTCG TGGCCAGGGT
    TCTAACTATG GAAGTAGACT AATTTCTAAT GTGGGTATGG GAAACCAAGG
    CTGGATTGGG GTTGACAACA GTCGAGGGCG TGGAAGGGTT AGTGATCCAT
    CTTTGGGTGG TGCTTATAAT GGTACTTTTG ATATCCTCAA TGAGCAAAAT
    CGAGGACCAA GGGCTTCAAA GCCCAAGACT CAGGTCTTAG AGGAGCTTGA
    TTCTGCTGCT GATTCTAAGA AAAATAACAA AGGCAGTGCA AAGGAGCACG
    AGGAATCCAA CAACGCAGAC TTTGTCACCG ACTACACTAA CGCCAAGTTG
    TTCATCATCA AGTCTTACAG TGAAGACAAT GTTCACAAAA GCATCAAATA
    CAATGTATGG GCTAGCACCC CTAATGGCAA CAAAAAGCTT GACGCTGCTT
    ATCGTGAGGC CAAGGATGAG AAAGAACCGT GTCCACTTTT TCTTCTGTTC
    TCGGTAAATG CGAGCTCTCA ATTCTGTGGT GTAGCAGAGA TGGTTGGACC
    TGTTGATTTT GAGAAGAGCG TTGATTACTG GCAACAAGAT AAATGGAGTG
    GACAGTTCCC AGTGAAGTGG CACATTATCA AAGATGTTCC AAACAGCCAG
    TTCCGCCACA TTATATTGGA AAACAATGAC AATAAGCCTG TGACTAATAG
    TCGAGACACC CAAGAAGTAA AACTGGAACA GGGCATCGAG ATGCTGAAGA
    TCTTCAAGAA CTACGACGCT GACACGTCAA TCTTGGATGA TTTCGGGTTT
    TATGAAGAGC GGGAGAAAAT TATACAAGAC CGGAAGGCAA GAAGACAGCC
    AAGCTTGCCA TCTGCAGGAG TAGTAGCAGG AGAAAATGAA CATAAACCTG
    CTTCTGCTGC ATTACCCACA GACTTCATGA AGAACATGTC CAAGAGTTTT
    GCGCAAGTTG TCCGCTTGGA CGAAGGCAGC AAAGAAGCAG TCAAGGCCAG
    TTCATCTCCA GATGCAATTA CAACAGCAGC AGTCTCTTCT GGTCAATCCA
    ACTAGTAAGT AAAAGACATC AATTAGCAAA GACTATGTTT TCAAATTCCA
    TAATATGATC TTTTGTTTGT TCTAAGAAGG TATTTCAAAC GAAAAAAAAA
    A

    Gene models with high sequence identity

    1. AT3G13060.2 [+] show detail - evolutionarily conserved C-terminal region 5
      E-value: 0; Score: 99.95

     

    InterPro Scan Digest

    Program Description E-value
    ProfileScan YTH domain 50.402
    HMMPfam YTH domain 1.6e-29
    HMMPanther YTH DOMAIN-CONTAINING 5.1e-112
    HMMPanther YTH domain 5.1e-112

    See the detailed result >

    AT3G13060.2

    Model type
    Protein coding
    Short Description
    evolutionarily conserved C-terminal region 5
    Computational Description
    evolutionarily conserved C-terminal region 5 (ECT5); CONTAINS InterPro DOMAIN/s: YTH domain (InterPro:IPR007275); BEST Arabidopsis thaliana protein match is: evolutionarily conserved C-terminal region 2 (TAIR:AT3G13460.4); Has 1288 Blast hits to 1234 proteins in 189 species: Archae - 0; Bacteria - 12; Metazoa - 605; Fungi - 140; Plants - 385; Viruses - 0; Other Eukaryotes - 146 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR