F12516

RIKEN Arabidopsis full-length cDNA overexpressed Arabidopsis lines

Original: F12516

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: F12516

Determination of introduced cDNA(s)

  • RAFL15-14-A05 - RIKEN Arabidopsis Full-length cDNAs - Original: RAFL15-14-A05 - Resource: pda19175

    full reading [+] show sequence

    Nucleotide sequence: RAFL15-14-A05 - full reading 
    TGGTTTTGTT TTTGAATCAG ATCCTTATTC TTGACCTTTC GATCAGATTC 
    ATGGCAACGA CTCAATCACA CACCTCAGAT CTTACTTCAG AGGAGCAACC 
    TGCTAGTTTG GACATCATGA AGGAGCAGAC TGTCCCGGCA AACAACGAGA 
    CATCAGCCTC TTTTAAGTCC TCCCAGGAAG CTCCAGTTGT AGTTCATCCA 
    GCAAAAGTTG CTCCACTTAC TGGACCTTAT GGTTTAGCCG GTGATTTTGC 
    CGGACACTTA CCTAGCAGCA TCCTCTCTCC TCAAGCACAA GGCTTTTACT 
    ATAGAGGTTA TGAAAACCCC ACAGGCGAAT GGGACGAGTA TTCCTCGTAT 
    GTCAATGTTG AAGGATTGGA CATCACATCT CCTGTTGGCT TCAATGAGAA 
    TGCTTCTCTG GTCTACCAAA CGGGATATGG ATACAACCCT CAAATGCCAT 
    ATGGGCCATA TTCCCCTGCA GCAAGTCCCT TGCCTTCTGA GGGACAGTTG 
    TATTCTCCAC AACAGTTTCC GTTTTCAGGG GCATCACCGT ATTACCAGCA 
    GGTAGTTCCT CCTAGCATGC AATATATTAC TTCTCCAACT CAGCCCGAGC 
    TCACCAGCCT TGTCGGTGTT GACCAACAAG GTGATAACAT CGGACCACGC 
    CAATCCTACC ATCCTCATCC CATTGGACCG TTTAATGGAA ACCAGCCAAA 
    CCTTGGTTTT CCTGAATGGC AGCAAGGTTT TGACGGGGGA ATATGGTCGG 
    ATTGGTCCAA GCCTTCTGAT ATGCACAGGC ATTCTTCTTC TATTTCTCCG 
    GCTTTATCTC CTCAGCCACT CGGCTCATAT GGATCATATG GCCAGAACAT 
    ACCCATGGGG TCACAGCGAC AGAGATCATT TTACGGTTTT GGATCTGGTT 
    CGAACTCTTA TAACAGAGGT TATATGCATA GTGGTGGTCG TGGCCAGGGT 
    TCTAACTATG GAAGTAGACT AATTTCTAAT GTGGGTATGG GAAACCAAGG 
    CTGGATTGGG GTTGACAACA GTCGAGGGCG TGGAAGGGTT AGTGATCCAT 
    CTTTGGGTGG TGCTTATAAT GGTACTTTTG ATATCCTCAA TGAGCAAAAT 
    CGAGGACCAA GGGCTTCAAA GCCCAAGACT CAGGTCTTAG AGGAGCTTGA 
    TTCTGCTGCT GATTCTAAGA AAAATAACAA AGGCAGTGCA AAGGAGCACG 
    AGGAATCCAA CAACGCAGAC TTTGTCACCG ACTACACTAA CGCCAAGTTG 
    TTCATCATCA AGTCTTACAG TGAAGACAAT GTTCACAAAA GCATCAAATA 
    CAATGTATGG GCTAGCACCC CTAATGGCAA CAAAAAGCTT GACGCTGCTT 
    ATCGTGAGGC CAAGGATGAG AAAGAACCGT GTCCACTTTT TCTTCTGTTC 
    TCGGTAAATG CGAGCTCTCA ATTCTGTGGT GTAGCAGAGA TGGTTGGACC 
    TGTTGATTTT GAGAAGAGCG TTGATTACTG GCAACAAGAT AAATGGAGTG 
    GACAGTTCCC AGTGAAGTGG CACATTATCA AAGATGTTCC AAACAGCCAG 
    TTCCGCCACA TTATATTGGA AAACAATGAC AATAAGCCTG TGACTAATAG 
    TCGAGACACC CAAGAAGTAA AACTGGAACA GGGCATCGAG ATGCTGAAGA 
    TCTTCAAGAA CTACGACGCT GACACGTCAA TCTTGGATGA TTTCGGGTTT 
    TATGAAGAGC GGGAGAAAAT TATACAAGAC CGGAAGGCAA GAAGACAGCC 
    AAGCTTGCCA TCTGCAGGAG TAGTAGCAGG AGAAAATGAA CATAAACCTG 
    CTTCTGCTGC ATTACCCACA GACTTCATGA AGAACATGTC CAAGAGTTTT 
    GCGCAAGTTG TCCGCTTGGA CGAAGGCAGC AAAGAAGCAG TCAAGGCCAG 
    TTCATCTCCA GATGCAATTA CAACAGCAGC AGTCTCTTCT GGTCAATCCA 
    ACTAGTAAGT AAAAGACATC AATTAGCAAA GACTATGTTT TCAAATTCCA 
    TAATATGATC TTTTGTTTGT TCTAAGAAGG TATTTCAAAC GAAAAAAAAA 
    A

    Gene models with high sequence identity

    1. AT3G13060.2 [+] show detail - evolutionarily conserved C-terminal region 5
      E-value: 0; Score: 99.95

     

    InterPro Scan Digest

    Program Description E-value
    ProfileScan YTH domain 50.402
    HMMPfam YTH domain 1.6e-29
    HMMPanther YTH DOMAIN-CONTAINING 5.1e-112
    HMMPanther YTH domain 5.1e-112

    See the detailed result >

    AT3G13060.2

    Model type
    Protein coding
    Short Description
    evolutionarily conserved C-terminal region 5
    Computational Description
    evolutionarily conserved C-terminal region 5 (ECT5); CONTAINS InterPro DOMAIN/s: YTH domain (InterPro:IPR007275); BEST Arabidopsis thaliana protein match is: evolutionarily conserved C-terminal region 2 (TAIR:AT3G13460.4); Has 1288 Blast hits to 1234 proteins in 189 species: Archae - 0; Bacteria - 12; Metazoa - 605; Fungi - 140; Plants - 385; Viruses - 0; Other Eukaryotes - 146 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR