F12527

RIKEN Arabidopsis full-length cDNA overexpressed Arabidopsis lines

Original: F12527

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T1  
whole plant (PO:0000003)
  • increased height (PATO:0000570)
    (Adult plant::Plant height::tall)
cauline leaf (PO:0000013)
  • epinastic (PATO:0000945)
    (Cauline leaf::Shape::epinastic)
rosette leaf (PO:0000014)
  • increased length (PATO:0000573)
    (Rosette leaf::Shape::long)
  • epinastic (PATO:0000945)
    (Rosette leaf::Shape::epinastic)
  • decreased width (PATO:0000599)
    (Rosette leaf::Shape::narrow)
fruit (PO:0009001)
  • decreased length (PATO:0000574)
    (Silique::Shape::short)
stem (PO:0009047)
  • abnormal (PATO:0000460)
    (Stem::Others)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: F12527

Determination of introduced cDNA(s)

  • RAFL07-16-N04 - RIKEN Arabidopsis Full-length cDNAs - Original: RAFL07-16-N04 - Resource: pda04369

    full reading [+] show sequence

    Nucleotide sequence: RAFL07-16-N04 - full reading 
    AACACCAAAC CCAAAACTCC CTTCTCTTTC TTCCTTCCTC TCCGATCTCC 
    GTTCACATCT CTCTCTCATC TTTATCTTCT TCTTTTTTTG CCTTGTGGGT 
    TGAAAGTTTC TATATTTTCT CTTTCTCTTC TGTTTACATA ATCCATTTTC 
    AGCTCAAGCA GCTGAAGAAT AACGATCAAG AACCAAAAAA GAAGAAAACG 
    AATCTGTTCT TAGCTTTGAT GGGTTCTTGC TTCAGTTCTC GAGTCAAAGC 
    AGACATCTTC CACAATGGTA AGAGCAGCGA TCTTTATGGT CTAAGTCTCT 
    CAAGTCGGAA ATCGTCTTCG ACTGTAGCGG CGGCTCAGAA GACGGAAGGG 
    GAGATATTGA GTTCGACCCC TGTCAAAAGC TTCACCTTTA ACGAACTCAA 
    ACTCGCCACA AGAAACTTCA GACCAGATAG TGTGATCGGA GAAGGTGGCT 
    TTGGTTGTGT CTTTAAAGGC TGGTTAGATG AGTCCACTCT CACTCCGACT 
    AAACCTGGAA CCGGTTTGGT CATCGCCGTT AAAAAGCTTA ACCAAGAAGG 
    TTTTCAAGGT CACCGTGAAT GGCTGACAGA GATCAATTAC TTGGGGCAAC 
    TGAGTCACCC AAATCTAGTT AAACTGATCG GTTATTGCTT AGAAGATGAA 
    CACCGTCTTC TAGTCTACGA GTTTATGCAA AAAGGAAGTC TTGAGAATCA 
    TCTATTCAGA AGAGGTGCAT ATTTTAAGCC ACTCCCATGG TTTCTACGGG 
    TCAATGTTGC GCTTGATGCA GCAAAGGGGC TTGCTTTTCT TCACAGCGAT 
    CCCGTCAAAG TGATATACCG AGACATTAAA GCCTCGAACA TCTTACTTGA 
    TGCGGACTAC AACGCAAAAC TTTCTGACTT TGGACTAGCT AGAGACGGTC 
    CAATGGGTGA TTTGAGTTAT GTTAGTACAA GGGTCATGGG TACTTATGGG 
    TACGCCGCGC CTGAGTACAT GTCATCAGGT CACTTGAATG CAAGAAGCGA 
    TGTGTACAGT TTCGGAGTTT TGCTTCTAGA GATTTTATCT GGTAAGCGAG 
    CGTTGGATCA TAACAGACCG GCTAAAGAAG AAAACCTTGT GGATTGGGCT 
    CGACCGTACC TCACAAGCAA ACGTAAGGTT CTCCTAATCG TGGACAATCG 
    GCTAGACACA CAGTACCTAC CTGAAGAAGC CGTGAGAATG GCAAGCGTGG 
    CGGTGCAGTG TCTCTCATTT GAACCCAAGT CGCGCCCGAC CATGGACCAA 
    GTGGTCCGTG CCTTACAACA ACTTCAGGAC AACTTGGGAA AACCGAGTCA 
    GACCAATCCG GTTAAGGATA CCAAGAAACT TGGTTTTAAA ACTGGTACTA 
    CTAAGTCATC CGAAAAACGG TTTACACAAA AACCTTTTGG CAGGCACCTT 
    GTGTAGGTCA AGTTGATAAC TGAATTCCAG GATGGACATT TTTCCGGCGG 
    TTTACTTGAA ACTGCCGATA TCCGTTTTCG ACGGATTGAA TGCGGTTCTG 
    GACAAACCGT GCAGGTCAAG ACTAATAAAG GATACATTAA ATTTTCCGGT 
    TACATGTCCC ATACCCAACC TTAGAGAACA TGTGTAGCCT TTAGCTTAGG 
    CTTCCTTGTG TGCTGTTATA TTGAGTATAT ATGAGGTAAT TTTTGCCTCT 
    TGTGTTGTAA CACTTGTATT TTTGTTCCTT TAACATTTGA TGTAGAGATT 
    TTTCCTATAT CTTC

    Gene models with high sequence identity

    1. AT2G39660.1 [+] show detail - botrytis-induced kinase1
      E-value: 0; Score: 100.00

     

    InterPro Scan Digest

    Program Description E-value
    ProfileScan Protein kinase, catalytic domain 38.958
    PatternScan Protein kinase, ATP binding site 0
    PatternScan Serine/threonine-protein kinase, active site 0
    HMMSmart Serine/threonine-protein kinase domain 1e-44
    HMMSmart Tyrosine-protein kinase, catalytic domain 5.6e-35
    Gene3D no description 3.5e-23
    Gene3D no description 1.5e-52
    HMMPanther SERINE-THREONINE PROTEIN KINASE, PLANT-TYPE 8.8e-169
    superfamily Protein kinase-like domain 4.5e-82
    HMMPfam Serine-threonine/tyrosine-protein kinase 7.6e-46

    See the detailed result >

    AT2G39660.1

    Model type
    Protein coding
    Short Description
    botrytis-induced kinase1
    Curator Summary
    Encodes a plasma membrane-localized ser/thr protein kinase that is a crucial component of host response signaling required to activate the resistance responses to Botrytis and A. brassicicola infection. It is likely a negative regulator of salicylic acid accumulation and basal defense against virulent bacterial pathogens.
    Computational Description
    botrytis-induced kinase1 (BIK1); FUNCTIONS IN: kinase activity; INVOLVED IN: protein amino acid autophosphorylation, defense response to fungus, N-terminal protein myristoylation, response to fungus; LOCATED IN: nucleolus, nucleus, plasma membrane, cytoplasm; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Protein kinase, catalytic domain (InterPro:IPR000719), Serine-threonine/tyrosine-protein kinase (InterPro:IPR001245), Protein kinase-like domain (InterPro:IPR011009), Serine/threonine-protein kinase, active site (InterPro:IPR008271); BEST Arabidopsis thaliana protein match is: PBS1-like 1 (TAIR:AT3G55450.1); Has 116707 Blast hits to 115355 proteins in 4256 species: Archae - 101; Bacteria - 13366; Metazoa - 43229; Fungi - 9583; Plants - 33164; Viruses - 356; Other Eukaryotes - 16908 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR