F12533

RIKEN Arabidopsis full-length cDNA overexpressed Arabidopsis lines

Original: F12533

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T2 seed (PO:0009010)
  • increased size (PATO:0000586)
    (Seed::Shape::large)
  • increased length (PATO:0000573)
    (Seed::Shape::long)
  • decreased width (PATO:0000599)
    (Seed::Shape::narrow)

Invisible phenotypes

Original: F12533

Determination of introduced cDNA(s)

  • RAFL06-70-L01 - RIKEN Arabidopsis Full-length cDNAs - Original: RAFL06-70-L01 - Resource: pdz87633

    3 prime EST [+] show sequence

    Nucleotide sequence: RAFL06-70-L01 - 3 prime EST 
    TGGTGGAATC AATCACTATT ATTAATCCGA TATTATAAGT TTTGTAGTCT 
    AGATATCCAA AGAGAATAAT TTCAATTTTT TTAAAAGATC ATACGAAACT 
    TTAAATTAGA GAGAAAAAAA AGAGAATTGA AAATTGATTA CCTATATTGG 
    AAATTTTTTA TATGATAAAT TTATCAAGTG AACGACTGAT TAGGAGTCGA 
    AGAGTTTGCA ACATCCTTCT TGACAACAAC GACCTCGTTT TTAGTCTTCC 
    TCCTTTTCTT CTTCCTGTAC GGAATCCCAC GAGCCTTGGA TTGAGATTCT 
    CTCACTTCCC TCAAGTGAAC CCGGATCGAC CCGTTTGCAA ACGGGTTAGT 
    ATCAGGTGAC CCGCCACCGT GTTCCTCGTA AGCAGCTCTT AGCCGTCCGA 
    TCAAAGCATC TAGGCTTCCC AAGCTTGT

    Gene models with high sequence identity

    1. AT4G18610.1 [+] show detail - Protein of unknown function (DUF640)
      E-value: 0; Score: 99.53

    AT4G18610.1

    Model type
    Protein coding
    Short Description
    Protein of unknown function (DUF640)
    Computational Description
    LIGHT SENSITIVE HYPOCOTYLS 9 (LSH9); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 6 plant structures; EXPRESSED DURING: petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF640 (InterPro:IPR006936); BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF640) (TAIR:AT1G07090.1); Has 307 Blast hits to 307 proteins in 18 species: Archae - 0; Bacteria - 0; Metazoa - 14; Fungi - 0; Plants - 293; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR