F12610

RIKEN Arabidopsis full-length cDNA overexpressed Arabidopsis lines

Original: F12610

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage
Phenotypes
T1  
whole plant (PO:0000003)
  • increased height (PATO:0000570)
    (Adult plant::Plant height::tall)
cauline leaf (PO:0000013)
  • decreased size (PATO:0000587)
    (Cauline leaf::Shape::small)
  • present in fewer numbers in organism (PATO:0001997)
    (Cauline leaf::Number::few)
  • epinastic (PATO:0000945)
    (Cauline leaf::Shape::epinastic)
  • abnormal (PATO:0000460)
    (Cauline leaf::Others)
rosette leaf (PO:0000014)
  • decreased size (PATO:0000587)
    (Rosette leaf::Shape::small)
  • increased width (PATO:0000600)
    (Rosette leaf::Shape::wide)
  • abnormal (PATO:0000460)
    (Rosette leaf::Others)
stem (PO:0009047)
  • present in fewer numbers in organism (PATO:0001997)
    (Stem::Number::few)
  • abnormal (PATO:0000460)
    (Stem::Others)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: F12610

Determination of introduced cDNA(s)

  • RAFL08-12-F21 - RIKEN Arabidopsis Full-length cDNAs - Original: RAFL08-12-F21 - Resource: pda17584

    full reading [+] show sequence

    Nucleotide sequence: RAFL08-12-F21 - full reading
    CCCCGGTTTT TCTCTCTCTC TCTCTCCCCT CAAACTTAAA TTCACATTTT 
    AATACTTGTT ACTTCAACTA TAATAATAAT AATAATCTTT CTTCATTATA
    TATTTTCCTC TCCTCTCAGA TCTTCTCTCT CACCATCTTC TCTTGAGATC
    AAGATTGAGT ATTCTTGTCT CAAGAATCGA TACTCGAGAG CTCTTATGGA
    CCAAAATGGT CATAACGACG AAGCAGAAAC AGTTTCATGC GGCAACGGCA
    ACTGCAAAAG CAAGATCGTG CCTGGAGATG ATCACGGTGG AGATGAGAGT
    AGTGGTACCA AGAGAAGGAA GAAGAGAAAA ACGCAACAAA AGACAATGAA
    ACGACGTGAA TTAATGTCGT ATTGTGAGCT ACCGGAGTAC ATGAAAGACA
    ACGAATACAT ATTGAATTAT TACAGAGCTG ATTGGTCCAT TAGAGATGCT
    TTCTTCAGCG TATTTAGTTT CCACAATGAG TCCCTCAATG TTTGGACACA
    TTTGATTGGT TTTATCTTCT TTGTGGCACT AACCGTCGCC AATATTATTC
    ATCACGACGG ATTCTTCCCC GTGGATGCAA AGAGTCCAGG GAATGTAACA
    AGATGGCCCT TCTTCGTTTT CTTAGGAGGC TCAATGTTCT GCCTACTCGC
    AAGCAGCATT TGTCACCTCT TCTGTTGCCA CTCAAAAGAG CTTAATGTCT
    TCCTTCTCCG AATAGACTAT GCCGGTATCA CCGCCATGAT CATCACTTCC
    TTCTTCCCAC CAATCTTCTA CATCTTCCAG TGCACTCCTC GGTGGTACTT
    CATCTACCTC GCAGGCATCA CATCCATGGG AATCTTCACA ATCATCACAC
    TTTTCACCCC ATCACTTTCC GCTCCCAAGT ACCGAGCTTT CCGCGCTTTG
    CTCTTTGCCT CCATGGGGCT GTTTGGGATT GTCCCAGCTG CCCACGCGCT
    AGTGGTCAAT TGGGGAAACC CGCAAAGGAA CGTGACGCTC GTGTACGAGT
    TGCTTATGGC AGTGTTCTAT CTTGTTGGAA CAGGATTCTA CGTAGGGAGA
    GTGCCAGAAA GGCTTAAACC GGGATGGTTT GATCGTGTGG GACATAGTCA
    TCAGATCTTC CATGTGTTCG TTTTGTTGGG TGCTTTGTCT CACTATGCAG
    CTGCTCTCTT GTTCTTGGAC TGGCGTGACC ACGTTGGTTG TTAAACCATA
    TATTTGTAAT TCTTTTAAAT ATAATATTAT TAATTTGTTG TATCGTGGTG
    AACAAAATTG TAATAACCCA TTTGTTTTAA ATTGAATTGT AATTCAACTA
    AAAAAAAAA

    Gene models with high sequence identity

    1. AT5G20270.1 [+] show detail - heptahelical transmembrane protein1
      E-value: 0; Score: 100.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMPfam Hly-III related 4.2e-71
    HMMPanther ADIPONECTIN RECEPTOR-RELATED 1.2e-192
    HMMPanther Hly-III related 1.2e-192

    See the detailed result >

    AT5G20270.1

    Model type
    Protein coding
    Short Description
    heptahelical transmembrane protein1
    Curator Summary
    heptahelical transmembrane protein homologous to human adiponectin receptors and progestin receptors
    Computational Description
    heptahelical transmembrane protein1 (HHP1); FUNCTIONS IN: receptor activity; INVOLVED IN: response to salt stress, response to hormone stimulus, response to sucrose stimulus; LOCATED IN: integral to membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Hly-III related (InterPro:IPR004254); BEST Arabidopsis thaliana protein match is: heptahelical transmembrane protein2 (TAIR:AT4G30850.2); Has 2727 Blast hits to 2656 proteins in 794 species: Archae - 0; Bacteria - 1143; Metazoa - 823; Fungi - 356; Plants - 236; Viruses - 0; Other Eukaryotes - 169 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR