F12616

RIKEN Arabidopsis full-length cDNA overexpressed Arabidopsis lines

Original: F12616

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T2 seed (PO:0009010)
  • increased size (PATO:0000586)
    (Seed::Shape::large)
  • increased length (PATO:0000573)
    (Seed::Shape::long)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: F12616

Determination of introduced cDNA(s)

  • RAFL09-65-F17 - RIKEN Arabidopsis Full-length cDNAs - Original: RAFL09-65-F17 - Resource: pda08615

    full reading [+] show sequence

    Nucleotide sequence: RAFL09-65-F17 - full reading 
    GGATAAAACA GAAACCTAAT CCCTTAAACC TCGCCGGCGA CGGAAAATGG 
    CTTTCGCGTC TCCTTCGCTC CGTCTTCTTC CTCAGTCTCC GTTAGGTCGA 
    ATAACATCTA AACTACACCG TTTCAGTACT GCGAAACTCT CACTCTTCTC 
    CTTTCACCAT GATTCTTCAT CTTCTTTGGC TGTCAGAACT CCGGTATCTT 
    CCTTCGTCGT CGGCGCTATC TCCGGAAAAT CCTCTACCGG AACGAAATCG 
    AAATCCAAAA CCAAACGGAA ACCACCTCCT CCTCCGCCAG TCACTACTGT 
    GGCTGAAGAG CAACACATTG CTGAGTCAGA GACAGTCAAC ATTGCCGAAG 
    ATGTCACTCA ATTGATTGGA AGCACACCAA TGGTCTATCT CAATAGAGTC 
    ACAGATGGTT GTTTGGCTGA CATTGCTGCC AAGCTCGAAT CAATGGAGCC 
    CTGTAGAAGC GTCAAAGATA GGATCGGTCT GAGCATGATC AACGAGGCAG 
    AAAACAGCGG AGCTATAACT CCGAGGAAGA CTGTATTAGT AGAACCAACA 
    ACCGGAAACA CTGGCCTTGG GATTGCATTT GTGGCTGCAG CTAAAGGCTA 
    CAAGCTTATA GTGACAATGC CAGCTTCTAT CAATATTGAA AGGAGGATGC 
    TTTTACGTGC ACTAGGAGCA GAGATTGTGC TAACGAATCC AGAGAAGGGT 
    CTCAAAGGAG CAGTGGATAA AGCCAAAGAG ATTGTTCTCA AGACAAAGAA 
    CGCATATATG TTTCAGCAAT TCGACAATAC AGCAAATACA AAGATCCACT 
    TTGAAACTAC AGGACCAGAA ATCTGGGAAG ATACAATGGG TAATGTCGAT 
    ATATTCGTTG CCGGAATAGG AACTGGTGGT ACTGTAACTG GTACTGGAGG 
    TTTCTTGAAA ATGATGAACA AGGATATTAA GGTAGTTGGC GTTGAACCAT 
    CAGAAAGAAG TGTGATTTCT GGAGACAACC CTGGTTACTT ACCGGGAATC 
    TTGGATGTTA AATTACTTGA TGAAGTGTTT AAGGTTAGCA ACGGGGAAGC 
    GATTGAGATG GCGAGGAGAC TAGCTTTAGA GGAAGGATTG CTGGTTGGGA 
    TTTCATCTGG AGCTGCTGCA GTAGCAGCAG TCAGCTTGGC TAAAAGAGCA 
    GAGAATGCCG GTAAACTAAT CACGGTTCTG TTTCCAAGCC ATGGCGAGCG 
    GTATATCACA ACGGCTCTGT TTAGTTCCAT CAACAGAGAA GTCCAAGAGA 
    TGAGATATTA GTAGCAGCCA TTAGAAAAGC CCCCAAAGTT TGGTCCTTTT 
    GGAGAGTGTA AACAACAAAT CTCTTTGCAA TACAGAAAAG AGAGGTTTCA 
    GAAGACTGTG AGGTTAGAGC TCACACGAGA ACTGAGAGAT AAACATGTCT 
    CGAGCCCAAC CAGTTTTATT CAAAGATTTG TGAATGTATA GAAGATCATA 
    GACCTTGTTG CATTATTCTT CTTCTTCTCA CTCATATGTC AGGGAAGTAT 
    GCTGAACAAA TAAAAGTTTG ATCATCTAAA CCCTGAAATT GATTTGAGAT 
    CTCCAAGATT GGAAAAACTC ACCGAGAGCA AGCATGTATG TACATTATAT 
    GGTGGTTAGA ACG

    Gene models with high sequence identity

    1. AT3G03630.1 [+] show detail - cysteine synthase 26
      E-value: 0; Score: 100.00

     

    InterPro Scan Digest

    Program Description E-value
    PatternScan Cysteine synthase/cystathionine beta-synthase P-phosphate-binding site 0
    Gene3D no description 5.8e-53
    HMMPfam Pyridoxal phosphate-dependent enzyme, beta subunit 5.7e-50
    superfamily Pyridoxal phosphate-dependent enzyme, beta subunit 6.8e-82
    HMMPanther CYSTEINE SYNTHASE 8e-124
    HMMPanther SER/THR DEHYDRATASE, TRP SYNTHASE 8e-124
    HMMTigr Cysteine synthase K/M 1.2e-158
    HMMTigr Cysteine synthase A 6.3e-160

    See the detailed result >

    AT3G03630.1

    Model type
    Protein coding
    Short Description
    cysteine synthase 26
    Curator Summary
    Encodes a protein that possesses S-sulfocysteine synthase activity and lacks O-acetylserien(thiol)lyase activity.
    Computational Description
    cysteine synthase 26 (CS26); FUNCTIONS IN: cysteine synthase activity; INVOLVED IN: regulation of hydrogen peroxide metabolic process, cysteine biosynthetic process, regulation of superoxide metabolic process, photosynthesis; LOCATED IN: chloroplast; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: Cysteine synthase/cystathionine beta-synthase P-phosphate-binding site (InterPro:IPR001216), Cysteine synthase A (InterPro:IPR005859), Pyridoxal phosphate-dependent enzyme, beta subunit (InterPro:IPR001926), Cysteine synthase K/M (InterPro:IPR005856); BEST Arabidopsis thaliana protein match is: O-acetylserine (thiol) lyase isoform C (TAIR:AT3G59760.3); Has 20790 Blast hits to 20777 proteins in 2676 species: Archae - 415; Bacteria - 14597; Metazoa - 363; Fungi - 563; Plants - 551; Viruses - 2; Other Eukaryotes - 4299 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR