F12627

RIKEN Arabidopsis full-length cDNA overexpressed Arabidopsis lines

Original: F12627

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage
Phenotypes
T1  
whole plant (PO:0000003)
  • decreased height (PATO:0000569)
    (Adult plant::Plant height::short)
cauline leaf (PO:0000013)
  • epinastic (PATO:0000945)
    (Cauline leaf::Shape::epinastic)
rosette leaf (PO:0000014)
  • increased width (PATO:0000600)
    (Rosette leaf::Shape::wide)
  • abnormal (PATO:0000460)
    (Rosette leaf::Others)
fruit (PO:0009001)
  • decreased length (PATO:0000574)
    (Silique::Shape::short)
stem (PO:0009047)
  • abnormal (PATO:0000460)
    (Stem::Others)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: F12627

Determination of introduced cDNA(s)

  • RAFL06-74-D03 - RIKEN Arabidopsis Full-length cDNAs - Original: RAFL06-74-D03 - Resource: pda03477

    full reading [+] show sequence

    Nucleotide sequence: RAFL06-74-D03 - full reading
    GAACTTGTTT TTGGTTCATC TCTCAAAACC AAAATCACTA AAGAGGAGAA 
    GATTGCTAAA GTTTGATAAA ACATTCCAAA ATCAATGGCT GATAGGATCA
    AAGGTCCATG GAGTCCTGAA GAAGACGAGC AGCTTCGTAG GCTTGTTGTT
    AAATACGGTC CAAGAAACTG GACAGTGATT AGCAAATCTA TTCCCGGTAG
    ATCGGGGAAA TCGTGTCGTT TACGGTGGTG CAACCAGCTT TCGCCGCAAG
    TTGAGCATCG GCCGTTTTCG GCTGAGGAAG ACGAGACGAT CGCACGTGCT
    CACGCTCAGT TCGGTAATAA ATGGGCGACG ATTGCTCGTC TTCTCAACGG
    TCGTACGGAC AACGCCGTGA AGAATCACTG GAACTCGACG CTCAAGAGGA
    AATGCGGCGG TTACGACCAT CGGGGTTACG ATGGTTCGGA GGATCATCGG
    CCGGTTAAGA GATCGGTGAG TGCGGGATCT CCACCTGTTG TTACTGGGCT
    TTACATGAGC CCAGGAAGCC CAACTGGATC TGATGTCAGT GATTCAAGTA
    CTATCCCGAT ATTACCTTCC GTTGAGCTTT TCAAGCCTGT GCCTAGACCT
    GGTGCTGTTG TGCTACCGCT TCCTATCGAA ACGTCGTCTT CTTCCGATGA
    TCCACCGACT TCGTTAAGCT TGTCACTTCC TGGTGCCGAC GTAAGCGAGG
    AGTCAAACCG TAGCCACGAG TCAACGAATA TCAACAACAC CACTTCGAGC
    CGCCACAACC ACAACAATAC GGTGTCGTTT ATGCCGTTTA GTGGTGGGTT
    TAGAGGTGCG ATTGAGGAAA TGGGGAAGTC TTTTCCCGGT AACGGAGGCG
    AGTTTATGGC GGTGTTGCAA GAGATGATTA AGGCGGAAGT GAGGAGTTAC
    ATGACGGAGA TGCAACGGAA CAATGGTGGC GGATTCGTCG GAGGATTCAT
    TGATAATGGC ATGATTCCGA TGAGTCAAAT TGGAGTTGGG AGAATCGAGT
    AGACAAAGTG AGATTATTAG GAAACTGTTT AAATTGGAGA AGAAGAAAAA
    TGCTCTGTTT TTTTCTCCTT TGGATTAGGC TTAAGAATTT TGGGTTTTAA
    GGAAATGTAT AGAGGAAATC GAGTGAACAA AGCTCGAGAG CTGGGGACGT
    AGTGACGAAG ACGAAGATCA AATTTCTCTT AAGCTATTCA GGAAAATAAA
    ATAAATTTTT ATTTATAACC

    Gene models with high sequence identity

    1. AT5G67300.1 [+] show detail - myb domain protein r1
      E-value: 0; Score: 99.92

     

    InterPro Scan Digest

    Program Description E-value
    ProfileScan HTH transcriptional regulator, Myb-type, DNA-binding 27.399
    ProfileScan HTH transcriptional regulator, Myb-type, DNA-binding 19.77
    HMMSmart SANT, DNA-binding 1.6e-17
    HMMSmart SANT, DNA-binding 0.000000000000013
    HMMPanther R2R3-MYB TRANSCRIPTION FACTOR 1e-185
    HMMPanther Myb transcription factor 1e-185
    Gene3D Homeodomain-related 3.6e-16
    Gene3D Homeodomain-related 0.0000000000000084
    superfamily Homeodomain-like 1.4e-22
    superfamily Homeodomain-like 0.000000031
    HMMPfam Myb, DNA-binding 1.7e-16
    HMMPfam Myb, DNA-binding 0.000000000000002

    See the detailed result >

    AT5G67300.1

    Model type
    Protein coding
    Short Description
    myb domain protein r1
    Curator Summary
    Member of the R2R3 factor MYB gene family involved in mediating plant responses to a variety of abiotic stimiuli.
    Computational Description
    myb domain protein r1 (MYBR1); CONTAINS InterPro DOMAIN/s: SANT, DNA-binding (InterPro:IPR001005), Homeodomain-like (InterPro:IPR009057), Myb, DNA-binding (InterPro:IPR014778), HTH transcriptional regulator, Myb-type, DNA-binding (InterPro:IPR017930), Homeodomain-related (InterPro:IPR012287), Myb transcription factor (InterPro:IPR015495); BEST Arabidopsis thaliana protein match is: myb domain protein 77 (TAIR:AT3G50060.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR