F12627

RIKEN Arabidopsis full-length cDNA overexpressed Arabidopsis lines

Phenotypes

Morphological phenotypes

Generation	Anatomical entity /structure development stage	Phenotypes
T1
	whole plant (PO:0000003)	decreased height (PATO:0000569) (Adult plant::Plant height::short)
	cauline leaf (PO:0000013)	epinastic (PATO:0000945) (Cauline leaf::Shape::epinastic)
	rosette leaf (PO:0000014)	increased width (PATO:0000600) (Rosette leaf::Shape::wide) abnormal (PATO:0000460) (Rosette leaf::Others)
	fruit (PO:0009001)	decreased length (PATO:0000574) (Silique::Shape::short)
	stem (PO:0009047)	abnormal (PATO:0000460) (Stem::Others)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: F12627

Determination of introduced cDNA(s)

RAFL06-74-D03 - RIKEN Arabidopsis Full-length cDNAs - Original: RAFL06-74-D03 - Resource: pda03477

full reading [+] show sequence

GAACTTGTTT TTGGTTCATC TCTCAAAACC AAAATCACTA AAGAGGAGAA 
GATTGCTAAA GTTTGATAAA ACATTCCAAA ATCAATGGCT GATAGGATCA 
AAGGTCCATG GAGTCCTGAA GAAGACGAGC AGCTTCGTAG GCTTGTTGTT 
AAATACGGTC CAAGAAACTG GACAGTGATT AGCAAATCTA TTCCCGGTAG 
ATCGGGGAAA TCGTGTCGTT TACGGTGGTG CAACCAGCTT TCGCCGCAAG 
TTGAGCATCG GCCGTTTTCG GCTGAGGAAG ACGAGACGAT CGCACGTGCT 
CACGCTCAGT TCGGTAATAA ATGGGCGACG ATTGCTCGTC TTCTCAACGG 
TCGTACGGAC AACGCCGTGA AGAATCACTG GAACTCGACG CTCAAGAGGA 
AATGCGGCGG TTACGACCAT CGGGGTTACG ATGGTTCGGA GGATCATCGG 
CCGGTTAAGA GATCGGTGAG TGCGGGATCT CCACCTGTTG TTACTGGGCT 
TTACATGAGC CCAGGAAGCC CAACTGGATC TGATGTCAGT GATTCAAGTA 
CTATCCCGAT ATTACCTTCC GTTGAGCTTT TCAAGCCTGT GCCTAGACCT 
GGTGCTGTTG TGCTACCGCT TCCTATCGAA ACGTCGTCTT CTTCCGATGA 
TCCACCGACT TCGTTAAGCT TGTCACTTCC TGGTGCCGAC GTAAGCGAGG 
AGTCAAACCG TAGCCACGAG TCAACGAATA TCAACAACAC CACTTCGAGC 
CGCCACAACC ACAACAATAC GGTGTCGTTT ATGCCGTTTA GTGGTGGGTT 
TAGAGGTGCG ATTGAGGAAA TGGGGAAGTC TTTTCCCGGT AACGGAGGCG 
AGTTTATGGC GGTGTTGCAA GAGATGATTA AGGCGGAAGT GAGGAGTTAC 
ATGACGGAGA TGCAACGGAA CAATGGTGGC GGATTCGTCG GAGGATTCAT 
TGATAATGGC ATGATTCCGA TGAGTCAAAT TGGAGTTGGG AGAATCGAGT 
AGACAAAGTG AGATTATTAG GAAACTGTTT AAATTGGAGA AGAAGAAAAA 
TGCTCTGTTT TTTTCTCCTT TGGATTAGGC TTAAGAATTT TGGGTTTTAA 
GGAAATGTAT AGAGGAAATC GAGTGAACAA AGCTCGAGAG CTGGGGACGT 
AGTGACGAAG ACGAAGATCA AATTTCTCTT AAGCTATTCA GGAAAATAAA 
ATAAATTTTT ATTTATAACC

Gene models with high sequence identity

AT5G67300.1 [+] show detail - myb domain protein r1
E-value: 0; Score: 99.92

InterPro Scan Digest

Program	Description	E-value
ProfileScan	HTH transcriptional regulator, Myb-type, DNA-binding	27.399
ProfileScan	HTH transcriptional regulator, Myb-type, DNA-binding	19.77
HMMSmart	SANT, DNA-binding	1.6e-17
HMMSmart	SANT, DNA-binding	1.3e-14
HMMPanther	R2R3-MYB TRANSCRIPTION FACTOR	1e-185
HMMPanther	Myb transcription factor	1e-185
Gene3D	Homeodomain-related	3.6e-16
Gene3D	Homeodomain-related	8.4e-15
superfamily	Homeodomain-like	1.4e-22
superfamily	Homeodomain-like	3.1e-08
HMMPfam	Myb, DNA-binding	1.7e-16
HMMPfam	Myb, DNA-binding	2e-15

See the detailed result >

AT5G67300.1

Model type: Protein coding
Short Description: myb domain protein r1
Curator Summary: Member of the R2R3 factor MYB gene family involved in mediating plant responses to a variety of abiotic stimiuli.
Computational Description: myb domain protein r1 (MYBR1); CONTAINS InterPro DOMAIN/s: SANT, DNA-binding (InterPro:IPR001005), Homeodomain-like (InterPro:IPR009057), Myb, DNA-binding (InterPro:IPR014778), HTH transcriptional regulator, Myb-type, DNA-binding (InterPro:IPR017930), Homeodomain-related (InterPro:IPR012287), Myb transcription factor (InterPro:IPR015495); BEST Arabidopsis thaliana protein match is: myb domain protein 77 (TAIR:AT3G50060.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Link: InterPro Scan - TAIR