F12637

RIKEN Arabidopsis full-length cDNA overexpressed Arabidopsis lines

Original: F12637

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: F12637

Determination of introduced cDNA(s)

  • RAFL05-02-O13 - RIKEN Arabidopsis Full-length cDNAs - Original: RAFL05-02-O13 - Resource: pdz87443

    5 prime EST [+] show sequence

    Nucleotide sequence: RAFL05-02-O13 - 5 prime EST
    GTACATAATC ATCTCACTCC TTTACTCACA CAAGAAAACA AAATCATGTC 
    TCGATTTGCT ATCTTAGTAA CCTTGGCACT TGCCATTGCC ACTGTTTCGG
    TGGTTATAGC TCAAGTCCCT CCGGAGAAAC AATTCAGAGT CGTCAACGAA
    GGAGAATTCG GTGAATACAT CACTGAGTAC GACGCAAGTT ACAGATTCAT
    CGAATCATCA AACCAGAGCT TCTTCACATC ACCATTCCAG CTCTTGTTTT
    ACAACACTAC CCCTAGCGCC TACATCTTAG CTCTCCGAGT CGGACTCAGG
    CGTGACGAGT CTACCATGCG TTGGATATGG GACGCGAATC GCAACAACCC
    CGTCGGAGAA AACGCTACAC TCTCACTCGG CCGTAACGGC AACCTCGTCC
    TCGCTGAAGC TGACGGACGA GTCAAATGGC AGACTAACAC AGCTAACAAA
    GGCGTCACCG GATTCCAAAT CTTACCCAAC GGAAACATCG TCCTACACGA
    CAAAAACGGC AAATTCGTAT GGCAGAGTTT CGATCACCCC ACCGATACAC
    TCCTCACCGG CCAATCGTTA AAAGTTAACG GAGTCAACAA ACTCGTTAGC
    CGTACATCTG ATTCGAACGG CTCAGATGGT CCGTACAGCA TGGTGCTGGA
    CAAAAAANGN TTAACCNT

    Gene models with high sequence identity

    1. AT1G78830.1 [+] show detail - Curculin-like (mannose-binding) lectin family protein
      E-value: 0; Score: 99.70

    3 prime EST [+] show sequence

    Nucleotide sequence: RAFL05-02-O13 - 3 prime EST
    GCTTCTCAAA GGTACTATAT ATATATAGTA AATACATCTG ATGGCTTTTT 
    TTTAAGGTAA TACAATATAT TCAACAGGTG GATCATTACA AGCACACCGA
    TTATTCATTA AATCTCTAAG AATTCAAAAA GAATTCGGTA AATAACTTTC
    CCAAAAAAAC ACTAATATTT GATGTAAGCA ACAGAAGAAG TGTTGGCATC
    TTTGATAAGT GTACCAAGCA GAGGAGCAAG CAAACATTTC TTGTCTTTCT
    CTTTGTAGAA GTAACCCAAA CACTTGCAAT CACGATCGCA CTTGGCCTTG
    CAATCGTTCA CAGAAGTTGG GCCTTGTCCA TCATTAACAT AAGGCCCAGT
    AAAATGCTCA ACACCGACTA TCTTATAATA ATTGACAGTT TTACCCTTGA
    CTCCGCTGCA AAACTGCGTC GTTTTAGGTG GTGCGCATTT ATCACTCCAT
    CCGAGTAATC CTTTTGGTGT AGGACACGCG TTGCACATCC CACGATCGCA
    GTAACCGTAA TCGCCGCAAA ACGACGGCAA GCCACATTGA CGGACGAAGT
    AAGTGGAGAA GAATGAGAAA CTCTCTTCCC ATTTGAGATA CGTAGCTGCT
    GGGAAATACG AGTAAGCCTT GAGACTCCCG TCAGATCCGA GTCTTAGATA
    C

    Gene models with high sequence identity

    1. AT1G78830.1 [+] show detail - Curculin-like (mannose-binding) lectin family protein
      E-value: 0; Score: 99.85

    AT1G78830.1

    Model type
    Protein coding
    Short Description
    Curculin-like (mannose-binding) lectin family protein
    Computational Description
    Curculin-like (mannose-binding) lectin family protein; FUNCTIONS IN: sugar binding; LOCATED IN: apoplast, cell wall, plasma membrane, plant-type cell wall; EXPRESSED IN: leaf; CONTAINS InterPro DOMAIN/s: Curculin-like (mannose-binding) lectin (InterPro:IPR001480), PAN-2 domain (InterPro:IPR013227); BEST Arabidopsis thaliana protein match is: D-mannose binding lectin protein with Apple-like carbohydrate-binding domain (TAIR:AT1G78820.1); Has 2662 Blast hits to 2603 proteins in 85 species: Archae - 0; Bacteria - 10; Metazoa - 0; Fungi - 0; Plants - 2651; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR