F12637

RIKEN Arabidopsis full-length cDNA overexpressed Arabidopsis lines

Original: F12637

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: F12637

Determination of introduced cDNA(s)

  • RAFL05-02-O13 - RIKEN Arabidopsis Full-length cDNAs - Original: RAFL05-02-O13 - Resource: pdz87443

    5 prime EST [+] show sequence

    Nucleotide sequence: RAFL05-02-O13 - 5 prime EST 
    GTACATAATC ATCTCACTCC TTTACTCACA CAAGAAAACA AAATCATGTC 
    TCGATTTGCT ATCTTAGTAA CCTTGGCACT TGCCATTGCC ACTGTTTCGG 
    TGGTTATAGC TCAAGTCCCT CCGGAGAAAC AATTCAGAGT CGTCAACGAA 
    GGAGAATTCG GTGAATACAT CACTGAGTAC GACGCAAGTT ACAGATTCAT 
    CGAATCATCA AACCAGAGCT TCTTCACATC ACCATTCCAG CTCTTGTTTT 
    ACAACACTAC CCCTAGCGCC TACATCTTAG CTCTCCGAGT CGGACTCAGG 
    CGTGACGAGT CTACCATGCG TTGGATATGG GACGCGAATC GCAACAACCC 
    CGTCGGAGAA AACGCTACAC TCTCACTCGG CCGTAACGGC AACCTCGTCC 
    TCGCTGAAGC TGACGGACGA GTCAAATGGC AGACTAACAC AGCTAACAAA 
    GGCGTCACCG GATTCCAAAT CTTACCCAAC GGAAACATCG TCCTACACGA 
    CAAAAACGGC AAATTCGTAT GGCAGAGTTT CGATCACCCC ACCGATACAC 
    TCCTCACCGG CCAATCGTTA AAAGTTAACG GAGTCAACAA ACTCGTTAGC 
    CGTACATCTG ATTCGAACGG CTCAGATGGT CCGTACAGCA TGGTGCTGGA 
    CAAAAAANGN TTAACCNT

    Gene models with high sequence identity

    1. AT1G78830.1 [+] show detail - Curculin-like (mannose-binding) lectin family protein
      E-value: 0; Score: 99.70

    3 prime EST [+] show sequence

    Nucleotide sequence: RAFL05-02-O13 - 3 prime EST 
    GCTTCTCAAA GGTACTATAT ATATATAGTA AATACATCTG ATGGCTTTTT 
    TTTAAGGTAA TACAATATAT TCAACAGGTG GATCATTACA AGCACACCGA 
    TTATTCATTA AATCTCTAAG AATTCAAAAA GAATTCGGTA AATAACTTTC 
    CCAAAAAAAC ACTAATATTT GATGTAAGCA ACAGAAGAAG TGTTGGCATC 
    TTTGATAAGT GTACCAAGCA GAGGAGCAAG CAAACATTTC TTGTCTTTCT 
    CTTTGTAGAA GTAACCCAAA CACTTGCAAT CACGATCGCA CTTGGCCTTG 
    CAATCGTTCA CAGAAGTTGG GCCTTGTCCA TCATTAACAT AAGGCCCAGT 
    AAAATGCTCA ACACCGACTA TCTTATAATA ATTGACAGTT TTACCCTTGA 
    CTCCGCTGCA AAACTGCGTC GTTTTAGGTG GTGCGCATTT ATCACTCCAT 
    CCGAGTAATC CTTTTGGTGT AGGACACGCG TTGCACATCC CACGATCGCA 
    GTAACCGTAA TCGCCGCAAA ACGACGGCAA GCCACATTGA CGGACGAAGT 
    AAGTGGAGAA GAATGAGAAA CTCTCTTCCC ATTTGAGATA CGTAGCTGCT 
    GGGAAATACG AGTAAGCCTT GAGACTCCCG TCAGATCCGA GTCTTAGATA 
    C

    Gene models with high sequence identity

    1. AT1G78830.1 [+] show detail - Curculin-like (mannose-binding) lectin family protein
      E-value: 0; Score: 99.85

    AT1G78830.1

    Model type
    Protein coding
    Short Description
    Curculin-like (mannose-binding) lectin family protein
    Computational Description
    Curculin-like (mannose-binding) lectin family protein; FUNCTIONS IN: sugar binding; LOCATED IN: apoplast, cell wall, plasma membrane, plant-type cell wall; EXPRESSED IN: leaf; CONTAINS InterPro DOMAIN/s: Curculin-like (mannose-binding) lectin (InterPro:IPR001480), PAN-2 domain (InterPro:IPR013227); BEST Arabidopsis thaliana protein match is: D-mannose binding lectin protein with Apple-like carbohydrate-binding domain (TAIR:AT1G78820.1); Has 2662 Blast hits to 2603 proteins in 85 species: Archae - 0; Bacteria - 10; Metazoa - 0; Fungi - 0; Plants - 2651; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR