F12639

RIKEN Arabidopsis full-length cDNA overexpressed Arabidopsis lines

Original: F12639

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: F12639

Determination of introduced cDNA(s)

  • RAFL05-10-D11 - RIKEN Arabidopsis Full-length cDNAs - Original: RAFL05-10-D11 - Resource: pda00985

    full reading [+] show sequence

    Nucleotide sequence: RAFL05-10-D11 - full reading 
    AGGAAGCCCT AAATTTGGAT TCTCTATTCT AAAGTTTTCT CATTTCGCTA 
    ATTTTGGAGA AAAACGATTG TTTTTTTTAA TCGTTTCTTC ATTTCTGATT 
    CATTTTTCTT GGTTTATGAT CTGTTCAAGT AAAGGAACAA TCTTAATCGC 
    TAGAGGTAAA AATTCAAATA CAATCCCTAG ATTACCCCTA AAAGGGTCAT 
    CCACAAATTA CGCGAATCGA ATTCAAATTC GAAACCCAAT CAGTGTCAAA 
    ACTTTCCGGC GATCATCTTC ATCGTCAATG GCGGTGGAAA CAATGTCGAT 
    GGGATCAGAT TCATCAACTT TGATTCTAAC ATCAGGAGCA AGCGGTCGCG 
    TTAGGGTACT CTTCTCGATG CGAGAGCTTA AGCGTCTCGT TACGATTATC 
    CAATCGTTGA TTCTTTTCCT CCTCCTTCCG TTTCGCGTCG TCGTTTGGCG 
    GCGGAGGACT GGTGCGGTGG TTATCAGAGA CGATAAGCAA GAGAGGAAGG 
    TTTGGTCTCC TCCGCAGATC GTGGTGAGGA AGAGGAACAT CGGTGGCGAA 
    AGCAGCGTTT CTCCTCCGTC GGTTCCAGCT GCGGTGGTGG ATGGGGAGGT 
    TGCTGTTCGA CGTGAACTGG CGATTAAGCG AGTTTTGGAG GATGAAGGCG 
    GCGATGGAAG CTCCGTCAGA GATTATTCGC TATTCACGAC GAAGAGAGGA 
    GATACGTTGT TTAGTCAGTC ATGGTCACCT CTTTCCCCAA ATCACAGGGG 
    ACTTATTGTT CTGCTACATG GATTAAACGA GCATAGTGGC AGGTATAGTG 
    ATTTTGCAAA GCAGCTTAAT GCTAATGGGT TCAAGGTCTA TGGAATTGAC 
    TGGATCGGTC ATGGCGGAAG TGATGGACTT CATGCTTACG TTCCTTCCCT 
    TGATTACGCT GTCACAGATT TGAAATCATT TCTTGAAAAG GTATTCACAG 
    AGAATCCAGG ACTCCCCTGT TTCTGCTTTG GACACTCAAC AGGTGGAGCA 
    ATCATCCTCA AGGCTATGCT GGATCCAAAG ATTGAATCTC GAGTTTCAGG 
    CATTGCATTG ACTTCACCAG CTGTTGGAGT CCAACCATCC CATCCAATCT 
    TCGCTGTTCT TGCTCCAATC ATGGCGTTTC TACTACCCAG GTACCAAATC 
    AGTGCAGCAA ACAAGAAAGG AATGCCGGTT TCTCGTGACC CAGCAGCTCT 
    CATCGCCAAA TACTCTGACC CATTAGTCTT CACCGGATCC ATCCGGGTTA 
    AAACCGGCTA CGAGATCCTT AGAATCACTG CTCACTTGCA ACAGAACCTG 
    AACAAAGTGA AAGTTCCCTT TCTTGTGATG CACGGTACTG ACGACACAGT 
    TACCGATCCT AGCGCCTCAA AGAAGCTCTA CGAGGAAGCT GCCTCGTCAG 
    ACAAATCACT CAAGCTCTAC GACGGGTTGT TGCACGATCT TCTTTTTGAA 
    CCCGAACGAG AAATCATCGC TGGAGCCATA TTAGATTGGC TAAACCAGCG 
    GGTTTAGCTC GTTCAAACCA ACAATCACTA TCGCATCGAA TCAAGAGATT 
    CTTGATTCAG ACAAGAATAA TTAATTCGCG GAATTTTCTG AGTGTGTTGA 
    CTGAGAAACG TGAGGAAAAA GAAGTTCTTG GTCGAATTTT CTCAACTCAG 
    AAGTAGAAGG AAGATAAGAG AAAAAGAGAG ACTCCAAATC TGGACTCTCT 
    TGCTATGCTT CTTGACGTCG GTATATTGTT ATAAATCAAT AATTTTGTAA 
    CCTTGGATTT TAATATCTTA TACCTGTAAT ACCAATTATT ATTTATATCG 
    AAACTATATA TGATTTTGGC GAAAAAAAAA AAAAAAA

    Gene models with high sequence identity

    1. AT1G73480.1 [+] show detail - alpha/beta-Hydrolases superfamily protein
      E-value: 0; Score: 100.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMPfam Hydrolase_4 9.3e-27
    Gene3D no description 5.8e-30
    Coil coiled-coil 0
    superfamily alpha/beta-Hydrolases 4.7e-49
    HMMPanther LYSOPHOSPHOLIPASE 1.5e-144
    HMMPanther PHOSPHOLIPASE-RELATED 1.5e-144

    See the detailed result >

    AT1G73480.1

    Model type
    Protein coding
    Short Description
    alpha/beta-Hydrolases superfamily protein
    Computational Description
    alpha/beta-Hydrolases superfamily protein; FUNCTIONS IN: hydrolase activity; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; BEST Arabidopsis thaliana protein match is: alpha/beta-Hydrolases superfamily protein (TAIR:AT1G18360.1); Has 6390 Blast hits to 6380 proteins in 1730 species: Archae - 36; Bacteria - 4672; Metazoa - 140; Fungi - 153; Plants - 452; Viruses - 63; Other Eukaryotes - 874 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR