F12645

RIKEN Arabidopsis full-length cDNA overexpressed Arabidopsis lines

Original: F12645

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T1  
cauline leaf (PO:0000013)
  • epinastic (PATO:0000945)
    (Cauline leaf::Shape::epinastic)
rosette leaf (PO:0000014)
  • decreased size (PATO:0000587)
    (Rosette leaf::Shape::small)
stem (PO:0009047)
  • increased thickness (PATO:0000591)
    (Stem::Shape::thick)
  • abnormal (PATO:0000460)
    (Stem::Others)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: F12645

Determination of introduced cDNA(s)

  • RAFL06-16-P19 - RIKEN Arabidopsis Full-length cDNAs - Original: RAFL06-16-P19 - Resource: pda07600

    full reading [+] show sequence

    Nucleotide sequence: RAFL06-16-P19 - full reading 
    CTGACTTCGC CGAATGTGTG TCGATCTCCG GCGAAGTAAT AAGTCGTAAT 
    AACCCTAAAA ATCTTGCCCT CTTTTTCGCC GCCGGCTAAA GCTATGAAGG 
    TTTTTAATCT TGACCGTGGA AACACTCTCT CTGTTTCCCT CTTCTCCGGT 
    GTCACCAACT CCAAGGAGCT CTTGAATTCA ATGCTTGACG GAAGTCTGAA 
    GCTGGAGGTC TCATTTCTCA ATGCATCACT TATTCCAGAC ATTTTTCCTC 
    TATTGGCTGC TGCTCAGAAA GCACTTATCT CCAAATCACG CGATTCCTTA 
    TCAACCAGAA CTCTTCATTC TGAGCTTGTC TACAATTACT CAGGATCTAA 
    GCACAATCAT TGAAACGATG TGGGATTTCT GAGAACACTA CTTACATTCT 
    AGCTGCCCGG TTCAATGCTT CTCCCGTTGA GATGGAGGAG GTGGCGAAAT 
    TGATCAACGG GAAGGAGATT GATTTGGAGG AATTGAAGAC ACATGCAAAT 
    CAAGCCAATA TACTAAAGCA TTACAAGATA ACTAGCCAAG AGCTCGGAAT 
    TTCCTCTCTG GGAGATGCCA TTGTTTGTCG AATAGCTGCA CGCGATGCTT 
    TGTAGGAGTA GACATCTTTT CTTTATGTCT TTTGTCACCA ATTATAGTTT 
    TCTCCTTTAT AAACAACGTT GACACTTACG TTTATAATTC AGACCAATGT 
    TGGGTTTCC

    Gene models with high sequence identity

    1. AT4G34412.1 [+] show detail - CONTAINS InterPro DOMAIN/s: Kinase binding protein CGI-121 (InterPro:IPR013926); Has 275 Blast hi...
      E-value: 0; Score: 99.02

     

    InterPro Scan Digest

    Program Description E-value
    HMMPanther gb def: At4g34412 7.5e-65
    HMMPanther CGI-121 FAMILY MEMBER 7.5e-65
    HMMPanther gb def: At4g34412 2.2e-67
    HMMPanther CGI-121 FAMILY MEMBER 2.2e-67
    HMMPfam Kinase binding protein CGI-121 0.0000000000000028
    HMMPfam Kinase binding protein CGI-121 0.00000000000007

    See the detailed result >

    AT4G34412.1

    Model type
    Protein coding
    Computational Description
    CONTAINS InterPro DOMAIN/s: Kinase binding protein CGI-121 (InterPro:IPR013926); Has 275 Blast hits to 275 proteins in 139 species: Archae - 0; Bacteria - 5; Metazoa - 98; Fungi - 109; Plants - 42; Viruses - 0; Other Eukaryotes - 21 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR