F12647

RIKEN Arabidopsis full-length cDNA overexpressed Arabidopsis lines

Phenotypes

Morphological phenotypes

Generation	Anatomical entity /structure development stage	Phenotypes
T1
	cauline leaf (PO:0000013)	decreased size (PATO:0000587) (Cauline leaf::Shape::small) present in fewer numbers in organism (PATO:0001997) (Cauline leaf::Number::few)
	rosette leaf (PO:0000014)	dark green (PATO:0001249) (Rosette leaf::Color::dark) decreased width (PATO:0000599) (Rosette leaf::Shape::narrow)
	stem (PO:0009047)	present in fewer numbers in organism (PATO:0001997) (Stem::Number::few)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: F12647

Determination of introduced cDNA(s)

RAFL09-95-E23 - RIKEN Arabidopsis Full-length cDNAs - Original: RAFL09-95-E23 - Resource: pda17919

full reading [+] show sequence

CCGGAACGAT TTGTTGGGTT TTCTTCTTTG TACTCTCTCC TCACATTAGC 
TTTTGTTGGT GGGATTTTTT GAGGATGGTG ATTGCTGCAG CTGTCATCGT 
GCCTTTGGGC CTTCTCTTCT TCATATCTGG TCTCGCTGTC AATCTCTTTC 
AGGCAGTTTG CTATGTACTC ATTCGACCAC TGTCTAAGAA CACATACAGA 
AAATTAACCG GGTGGTTGCA GAAACCTTGT GGTTGGAGCT TGTATGGATA 
GTTGACTGGT GGGCTGGAGT TAAGATCCAA GTGTTTGCTG ATAATGAGAC 
CTTCAATCGA ATGGGCAAAG AACATGCTCT TGTCGTTTGT AATCACCGAA 
GTGATATTGA TTGGCTTGTG GGATGGATTC TGGCTCAGCG GTCAGGTTGC 
CTGGGAAGCG CATTAGCTGT AATGAAGAAG TCTTCCAAAT TCCTTCCAGT 
CATAGGCTGG TCAATGTGGT TCTCGGAGTA TCTCTTTCTG GAAAGAAATT 
GGGCCAAGGA TGAAAGCACT CTAAAGTCAG GTCTTCAGCG CTTGAGCGAC 
TTCCCTCGAC CTTTCTGGTT AGCCCTTTTT GTGGAGGGAA CTCGCTTTAC 
AGAAGCCAAA CTTAAAGCCG CACAAGAGTA TGCAGCCTCC TCTGAATTGC 
CTATCCCTCG AAATGTGTTG ATTCCTCGCA CCAAAGGTTT CGTGTCAGCT 
GTTAGTAATA TGCGTTCATT TGTCCCAGCA ATTTATGATA TGACAGTGAC 
TATTCCAAAA ACCTCTCCAC CACCCACGAT GCTAAGACTA TTCAAAGGAC 
AACCTTCAGT GGTGCATGTT CACATCAAGT GTCACTCGAT GAAAGACTTA 
CCTGAATCAG ATGACGCAAT TGCACAGTGG TGCAGAGATC AGTTTGTGGC 
TAAGGATGCT CTGTTAGACA AACACATAGC TGCAGACACT TTCCCCGGTC 
AACAAGAACA GAACATTGGC CGTCCCATAA AGTCCCTTGC GGTGGTTCTA 
TCATGGGCAT GCGTACTAAC TCTTGGAGCA ATAAAGTTCC TACACTGGGC 
ACAACTCTTT TCTTCATGGA AAGGTATCAC GATATCGGCG CTTGGTCTAG 
GTATCATCAC TCTCTGTATG CAGATCCTGA TACGCTCGTC TCAGTCAGAG 
CGTTCGACCC CAGCCAAAGT CGTCCCAGCC AAGCCAAAAG ACAATCACCA 
CCCAGAATCA TCCTCCCAAA CAGAAACGGA GAAGGAGAAG TAAAAACTGG 
TTCTCACAGA TCCAAACATC AAACACAACA AGAAGAAGCG CGTGTCAGTT 
TTGTTATAAG AAACAGAAAA CCAAAAAAAA AAGACATCCA AATGAAAAAT 
CCCTTAATAT TATCAACTCC GTTTTGTTCA GCTACTATAT TACTACTACT 
ACTACTACGC AGCCTATGTC TCTTAGTCGA TTGATGTATA GGGTCATGAT 
CAAATCAACG ATTTAATCCC TATAGTCCCT TGGGATTTTT TTTCTCAAGT 
GCATAGGCCT TGTATAACTT TCTATTTTTA GATTGGAATT TGGGATTGAT 
AAAAAAAA

Gene models with high sequence identity

AT3G57650.1 [+] show detail - lysophosphatidyl acyltransferase 2
E-value: 0; Score: 99.94

InterPro Scan Digest

Program	Description	E-value
HMMPanther	1-ACYLGLYCEROL-3-PHOSPHATE ACYLTRANSFERASE	1.3e-152
HMMPanther	1-ACYLGLYCEROL-3-PHOSPHATE ACYLTRANSFERASE	1.3e-152
HMMSmart	Phospholipid/glycerol acyltransferase	3.5e-22
superfamily	Glycerol-3-phosphate (1)-acyltransferase	6.7e-06
HMMPfam	Phospholipid/glycerol acyltransferase	3.3e-20

See the detailed result >

AT3G57650.1

Model type: Protein coding
Short Description: lysophosphatidyl acyltransferase 2
Curator Summary: Encodes an endoplasmic reticulum localized protein with lysophosphatidyl acyltransferase activity.
Computational Description: lysophosphatidyl acyltransferase 2 (LPAT2); FUNCTIONS IN: 1-acylglycerol-3-phosphate O-acyltransferase activity; INVOLVED IN: metabolic process; LOCATED IN: endoplasmic reticulum; EXPRESSED IN: 28 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Phospholipid/glycerol acyltransferase (InterPro:IPR002123); BEST Arabidopsis thaliana protein match is: lysophosphatidyl acyltransferase 3 (TAIR:AT1G51260.1); Has 1646 Blast hits to 1643 proteins in 516 species: Archae - 0; Bacteria - 639; Metazoa - 536; Fungi - 213; Plants - 138; Viruses - 2; Other Eukaryotes - 118 (source: NCBI BLink).
Link: InterPro Scan - TAIR