F12649

RIKEN Arabidopsis full-length cDNA overexpressed Arabidopsis lines

Phenotypes

Morphological phenotypes

Generation	Anatomical entity /structure development stage	Phenotypes
T1
	whole plant (PO:0000003)	decreased height (PATO:0000569) (Adult plant::Plant height::short)
	cauline leaf (PO:0000013)	decreased size (PATO:0000587) (Cauline leaf::Shape::small) epinastic (PATO:0000945) (Cauline leaf::Shape::epinastic)
	rosette leaf (PO:0000014)	dark green (PATO:0001249) (Rosette leaf::Color::dark) decreased size (PATO:0000587) (Rosette leaf::Shape::small) present in fewer numbers in organism (PATO:0001997) (Rosette leaf::Number::few)
	stem (PO:0009047)	present in fewer numbers in organism (PATO:0001997) (Stem::Number::few)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: F12649

Determination of introduced cDNA(s)

RAFL04-20-J15 - RIKEN Arabidopsis Full-length cDNAs - Original: RAFL04-20-J15 - Resource: pda07218

full reading [+] show sequence

ATTCACACAC AAGTTGGTGT CAACGCTCAG ACAAGAAAGG CGTGTGTTCA 
TTGTTGAATC TTCCCATTTC CTCATCCAAA TTCCGACATA ACTATCCTAG 
CCGCCATTTG TTCTCCACAT TACAAAACCC TCAGCAGCTT CAAAACTCTT 
CCGATCTCTC CCTCACGCTC GCAATTCTCT CGTCTCCATT TTAATAGTTT 
TTCTTCTCGG AATCACAAAT CTTCGGCTTC TTGTTCCTTG GCGTGTGTGT 
GTGTTGTTGA ATGGCTCTTG TTCAGCGGAT TCCAATTTCC TCCTCCAGTA 
TTCGGAATTG GCAACAAGCG AGGACCAATT TGACTCCTAT TTGTTGTTTA 
CATTACAATA CTGCATCTTC TTCTTCTTCA CCCTTTACAG AGAAGCACTC 
TGTGGAGAGA TACCAAAGGG ATCAATGGCT GTACAAAGCG GTTGAACCAA 
CGCCACCATC GACTCCATCT CCATCGCCAT TTGAAGATGA AGTCTTTGTT 
AGGGAAAACG ACATTGCATC GCAGCTGCCT GAGCTGAAGA AGCTTTTGGC 
AGTGCTGAAA GAGAAGAGAG TTAAAGGATG CAAAGGTGGT GATTGTGGAC 
CAGGAGATGT GTATCTTGTT GGGACAGGGC CAGGAGATCC TGAGCTTTTG 
ACTCTTAAAG CTGTCAGAGT TATTCAAAGT GCCGATCTTT TGCTTTACGA 
CAGGCTTGTC TCCAATGATG TCTTGGAGTT GGTTGCTCCT GATGCTAGAC 
TTCTTTATGT CGGCAAAACT GCTGGTTATC ATAGCAGAAC TCAGGAAGAG 
ATTCATGAAC TACTCCTAAA TTTTGCTGAA GCTGGTGCCA CTGTTGTCAG 
GCTTAAAGGT GGAGATCCTC TGGTCTTTGG ACGGGGCGGC GAAGAAATGG 
ACTTTCTGCA ACAGCAAGGG ATTCGAGTTC AAGTTATACC AGGGATAACT 
GCGGCGTCGG GGATAGCAGC AGAGTTGGGG ATTCCACTAA CACATCGAGG 
TGTTGCAACT AGTGTAAGGT TTCTCACTGG TCATTCAAGG AAAGGAGGGA 
CAGACCCTCT GTTTGTTGCA GAGAATGCAG CTGACCCGGA TACAACACTT 
GTCGTTTATA TGGGTTTGGG AACTTTACCT TCTCTTGCAC AAAAACTAAT 
GGACCATGGT CTCCCTTCTG ATACACCAGC TGTTGCGGTT GAACGTGGAA 
CCACTCCTCT ACAGCGTACA GTTTTTGCTG AGCTTAAAGA TTTTGCAACT 
GAGATTCAGT CAGCTGGATT GGTGTCACCA ACACTCATCA TCATAGGGAA 
AGTCGTTGAG CTCTCACCTT TATGGCCACA TTGCACGAAA GAATCCTCCT 
GCCTTGTAGA GACCCGGTAG ATATTTCACT CTTATTTTAC GGGCGTGTGG 
CTTCCATCGA CATTACGGTG AAGTTTTAGG AGCTATGGAG CTATGAAGGT 
TGAGACTTGA GAGATGTAAT AAACAAAAAG GAAAGCTGAT AGTTTCTTAT 
GACGTGTCCT TCAATTGTTT TGGGACAATG GTAATGGCAA TGTTAATGTA 
ATAAACAAGT TTCAATCAGT GCCACTGTGA CTAATTTTTC CACCACAAGA 
TGATGTCTTT AAAACTTTAA TAGTCAAATT CAAATC

Gene models with high sequence identity

AT5G40850.1 [+] show detail - urophorphyrin methylase 1
E-value: 0; Score: 100.00

InterPro Scan Digest

Program	Description	E-value
HMMPanther	PTHR21091:SF16	4.30000170646176e-113
PatternScan	Uroporphiryn-III C-methyltransferase, conserved site	0
Gene3D	Tetrapyrrole methylase, subdomain 2	1.60000240695986e-36
HMMPIR	Uroporphyrin-III C-methyltransferase, plant	0
HMMTigr	Uroporphyrin-III C-methyltransferase, C-terminal	5.6999970878395e-108
HMMPfam	Tetrapyrrole methylase	3.09999999999998e-47
Gene3D	Tetrapyrrole methylase, subdomain 1	1e-38
superfamily	Tetrapyrrole methylase	4.2e-69
HMMPanther	PTHR21091	4.30000170646176e-113
PatternScan	Uroporphiryn-III C-methyltransferase, conserved site	0

See the detailed result >

AT5G40850.1

Model type: Protein coding
Short Description: urophorphyrin methylase 1
Curator Summary: Encodes a urophorphyrin III methylase that catalyzes S-adenosyl-L-methionine-dependent transmethylation in a multistep process involving the formation of a covalently linked complex with S-adenosyl-L-methionine.
Computational Description: urophorphyrin methylase 1 (UPM1); CONTAINS InterPro DOMAIN/s: Tetrapyrrole methylase (InterPro:IPR000878), Tetrapyrrole methylase, subdomain 1 (InterPro:IPR014777), Uroporphyrin-III C-methyltransferase, plant (InterPro:IPR012383), Uroporphyrin-III C-methyltransferase, C-terminal (InterPro:IPR006366), Tetrapyrrole methylase, subdomain 2 (InterPro:IPR014776), Uroporphiryn-III C-methyltransferase, conserved site (InterPro:IPR003043); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Link: InterPro Scan - TAIR