F12650

RIKEN Arabidopsis full-length cDNA overexpressed Arabidopsis lines

Original: F12650

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T2 seed (PO:0009010)
  • increased size (PATO:0000586)
    (Seed::Shape::large)
  • increased length (PATO:0000573)
    (Seed::Shape::long)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: F12650

Determination of introduced cDNA(s)

  • RAFL09-20-O21 - RIKEN Arabidopsis Full-length cDNAs - Original: RAFL09-20-O21 - Resource: pda08014

    full reading [+] show sequence

    Nucleotide sequence: RAFL09-20-O21 - full reading 
    AAGTTAACGG CGATTATCTT CGTTCACACA AGCAACACAA AAGAGAAAAC 
    ATGAATCATC TCTCTCTCCC TCTCTCCGGT TCCACAGTAA AGAATTGATT 
    CCTCAATCTC ACGCGGAAGC AAAATCCAAA TTCTAAAATT CTAAGAAACC 
    ACTCTAATCA CATCGCTCTA TCGATCAAAA TCGAAACCCT TATTCAAAAA 
    TCTCTTATTT TTTCCATTTT TCTCTCAATC ATCTGAATCG GTTTTGAGAT 
    GAGCTCCGAT TCACCGGCGG CTGGAGACGG TGGCGAACAA GCCGCTGTGG 
    GAACAAGCGT GCCTTCACCT TCATACGACA AACAAAAGGA GAAGGCACGT 
    GTGAGTAGAA CATCTCTGAT ACTATGGCAC GCGCACCAAA ACGACGCAGC 
    TGCAGTTCGG AAACTCTTGG AGGAAGATCC GACTTTGGTT CACGCTAGAG 
    ACTATGACAA ACGAACGCCT CTCCACGTGG CGTCGCTTCA TGGATGGATC 
    GATGTTGTTA AATGTCTGCT TGAGTTTGGT GCTGATGTCA ATGCTCAGGA 
    TAGGTGGAAG AACACGCCAC TGGCTGATGC AGAAGGAGCT AGGAAGCAGA 
    AAATGATTGA ACTGCTGAAA TCTCATGGTG GTTTGTCTTA TGGTCAAAAC 
    GGAAGTCACT TTGAACCAAA GCCTGTGCCA CCACCAATTC CAAAGAAATG 
    TGACTGGGAA ATTGAACCTG CTGAGCTGGA TTTTTCAAAT GCTGCAATGA 
    TTGGAAAGGG TTCATTTGGT GAGATTGTGA AAGCCTATTG GAGAGGAACA 
    CCGGTAGCTG TGAAACGTAT TCTTCCTTCT CTTTCAGATG ATAGACTGGT 
    TATTCAGGAC TTCAGGCATG AGGTTGATTT GCTAGTTAAG CTTCGCCATC 
    CAAATATAGT CCAATTCTTA GGAGCGGTAA CCGAAAGAAA GCCCCTTATG 
    TTAATCACTG AGTACTTACG CGGGGGAGAT CTTCATCAAT ACCTCAAGGA 
    GAAGGGCGGT CTTACTCCAA CAACTGCTGT CAACTTTGCT TTGGATATCG 
    CGAGAGGAAT GACATATCTT CACAATGAAC CTAATGTTAT CATTCACCGA 
    GATCTTAAAC CAAGGAACGT TCTTCTGGTT AATTCTAGTG CAGACCACTT 
    GAAAGTTGGA GACTTTGGAC TTAGTAAGCT CATAAAAGTT CAAAACTCTC 
    ATGATGTCTA CAAAATGACT GGAGAAACAG GAAGCTATCG TTATATGGCT 
    CCTGAAGTAT TCAAGCATAG AAGATATGAC AAGAAAGTCG ATGTCTTCTC 
    CTTTGCAATG ATACTTTACG AGATGCTTGA AGGAGAGCCA CCATTTGCGA 
    ACCATGAGCC ATATGAAGCA GCCAAACATG TATCTGATGG ACATAGACCT 
    ACATTCCGTT CCAAAGGATG CACACCAGAT CTAAGAGAGT TAATTGTGAA 
    ATGCTGGGAC GCAGACATGA ACCAGAGACC GTCGTTTCTG GACATTCTCA 
    AGAGACTTGA AAAGATCAAG GAAACTCTAC CATCAGATCA CCATTGGGGC 
    TTATTCACTT CATAATACAC AAAATCCATT ATTTAAGCAC AAAAACAACC 
    AGAAACAAGA AAGTATCATT CTCTGTTTGC CTTATTAATC TCTGTTTCAT 
    TTCTTTTGTA AAGATTGTTT CTTTTTCATC TTTTCATTTG CTTTAAAAGA 
    GTGTGAGATA GAAAGCTTTT ATTGTTGTTA CATGGATTGG ATTGAGTTTG 
    CAGGTTAATG AGAAGTTCAT ATCATATCG

    Gene models with high sequence identity

    1. AT1G14000.1 [+] show detail - VH1-interacting kinase
      E-value: 0; Score: 99.94

     

    InterPro Scan Digest

    Program Description E-value
    HMMSmart Ankyrin repeat 1.9e-05
    HMMSmart Serine/threonine-protein kinase domain 4.3e-69
    HMMSmart Tyrosine-protein kinase, catalytic domain 3.3e-80
    HMMPfam Serine-threonine/tyrosine-protein kinase 2.5e-66
    HMMPfam Ankyrin repeat 4.8e-11
    ProfileScan Protein kinase, catalytic domain 48.032
    ProfileScan Ankyrin repeat 14.639
    ProfileScan Ankyrin repeat-containing domain 17.369
    FPrintScan TYRKINASE 1.8e-11
    FPrintScan TYRKINASE 1.8e-11
    FPrintScan TYRKINASE 1.8e-11
    HMMPanther ANKYRIN-KINASE 7.7e-186
    HMMPanther SERINE-THREONINE PROTEIN KINASE 7.7e-186
    superfamily Protein kinase-like domain 7.2e-83
    superfamily Ankyrin repeat-containing domain 4.1e-22
    PatternScan Protein kinase, ATP binding site 0
    PatternScan Serine/threonine-protein kinase, active site 0
    Gene3D Ankyrin repeat-containing domain 5.5e-17
    Gene3D no description 1e-20
    Gene3D no description 2e-52
    HMMPIR Integrin-linked protein kinase 8.9e-268

    See the detailed result >

    AT1G14000.1

    Model type
    Protein coding
    Short Description
    VH1-interacting kinase
    Curator Summary
    Encodes a protein with similarity to members of the C1 subgroup of MAP kinase kinase kinases. Interacts physically with the receptor kinase BRL2/VH1 and appears to be involved in auxin and brassinosteriod signaling.
    Computational Description
    VH1-interacting kinase (VIK); CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Integrin-linked protein kinase (InterPro:IPR016253), Serine/threonine-protein kinase domain (InterPro:IPR002290), Serine-threonine/tyrosine-protein kinase (InterPro:IPR001245), Protein kinase-like domain (InterPro:IPR011009), Serine/threonine-protein kinase, active site (InterPro:IPR008271), Protein kinase, catalytic domain (InterPro:IPR000719), Ankyrin repeat-containing domain (InterPro:IPR020683), Ankyrin repeat (InterPro:IPR002110); BEST Arabidopsis thaliana protein match is: Integrin-linked protein kinase family (TAIR:AT3G58760.1); Has 139285 Blast hits to 133759 proteins in 5118 species: Archae - 180; Bacteria - 15286; Metazoa - 53967; Fungi - 12530; Plants - 33711; Viruses - 527; Other Eukaryotes - 23084 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR