F12708

RIKEN Arabidopsis full-length cDNA overexpressed Arabidopsis lines

Original: F12708

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: F12708

Determination of introduced cDNA(s)

  • RAFL09-81-E01 - RIKEN Arabidopsis Full-length cDNAs - Original: RAFL09-81-E01 - Resource: pda09929

    full reading [+] show sequence

    Nucleotide sequence: RAFL09-81-E01 - full reading
    TGAAAGAAGA AGATCTTACA TACGAAGATC ACTCTCTGAT TCACTCTGAG 
    AGACAAACTG GTTTACTTTG GTTCTGTTTG ACAAAAGGAG ACATGCAAAA
    ATAAATCTCT ATCCCTTGTT TTTCTTCTTC GCTTCATCGA TTACTCAAAG
    AGGTTGTTGG TTGTGAGAAT AATTAGCTTG TTAAGGAAGA CGTTATGATG
    CATCAGATGT TGAATAAGAA AGATTCAGCT ACTCATTCCA CTTTGCCATA
    CCTTAATACT AGCATCTCTT GGGGAGTGGT TCCAACTGAT TCCGTTGCTA
    ATCGTCGCGG TTCTGCTGAA TCACTAAGCT TGAAGGTTGA TTCAAGACCT
    GGGCATATAC AAACTACAAA GCAAATCAGT TTTCAGGACC AAGATTCATC
    TTCAACACAG TCCACTGGTC AATCTTATAC TGAAGTTGCT AGTAGTGGTG
    ATGATAATCC TTCCAGACAA ATCTCCTTTT CGGCTAAATC AGGATCTGAA
    ATAACTCAAC GGAAGGGGTT TGCAAGTAAT CCTAAACAAG GCTCGATGAC
    TGGATTTCCG AATATTCACT TTGCTCCTGC ACAGGCTAAT TTCTCATTTC
    ACTATGCTGA TCCACATTAT GGTGGTTTAT TAGCTGCAAC TTACCTACCA
    CAGGCACCAA CATGCAATCC TCAAATGGTG AGTATGATTC CTGGTCGTGT
    TCCTTTACCA GCAGAGCTCA CAGAAACTGA TCCAGTCTTT GTCAATGCGA
    AGCAATACCA CGCAATTATG AGGAGGAGAC AGCAACGTGC TAAGCTTGAG
    GCTCAAAACA AACTAATCAG AGCCCGTAAG CCCTATCTTC ATGAGTCTCG
    ACATGTTCAT GCTCTTAAAA GGCCAAGAGG ATCTGGTGGA AGATTCCTAA
    ACACCAAAAA ACTTCTTCAA GAATCCGAAC AGGCTGCTGC TAGAGAACAA
    GAACAGGACA AGTTAGGCCA ACAGGTAAAC AGAAAGACCA ACATGTCTAG
    ATTCGAAGCT CATATGCTGC AGAACAACAA AGACCGCAGC TCAACCACTT
    CTGGCTCAGA CATCACCTCT GTTTCCGACG GTGCTGATAT CTTTGGACAC
    ACTGAATTCC AGTTTTCAGG TTTCCCAACT CCGATAAACC GAGCCATGCT
    TGTTCATGGT CAGTCTAATG ACATGCATGG AGGTGGAGAC ATGCACCATT
    TCTCTGTCCA TATCTGAGAC AGTGGATCTT GGTGCTGTGT TCATGTTCCC
    ACCAAGAAGG GGAAGTCATC CTTGGCTACT ACTAGTTCTT TCGCTTGTTG
    TAACTTCAGT GTTTTTATTT CATATTATGT CTGTGTTAGA CATCACAAGA
    ACGACCAAGA TCTTCACTTT GAAACACTCT ATTACCTTTT CATCTTCTGT
    TACCATGGAT CTCTTGTCTA AACTAGTGAT ATGATTCTTC TGATAAACTT
    T

    Gene models with high sequence identity

    1. AT1G72830.1 [+] show detail - nuclear factor Y, subunit A3
      E-value: 0; Score: 100.00

     

    InterPro Scan Digest

    Program Description E-value
    PatternScan CCAAT-binding factor, conserved site 0
    HMMPanther TRANSCRIPTIONAL ACTIVATOR PHP2-RELATED 2.4e-136
    HMMPanther CCAAT-binding transcription factor, subunit B 2.4e-136
    FPrintScan CCAAT-binding transcription factor, subunit B 9.1e-24
    FPrintScan CCAAT-binding transcription factor, subunit B 9.1e-24
    ProfileScan CCAAT-binding transcription factor, subunit B 37.254
    HMMSmart CCAAT-binding transcription factor, subunit B 5.5e-38
    HMMPfam CCAAT-binding transcription factor, subunit B 9.8e-30

    See the detailed result >

    AT1G72830.1

    Model type
    Protein coding
    Short Description
    nuclear factor Y, subunit A3
    Curator Summary
    Encodes a subunit of CCAAT-binding complex, binds to CCAAT box motif present in some plant promoter sequences. One of three members of this class (HAP2A, HAP2B, HAP2C), it is expressed in vegetative and reproductive tissues.
    Computational Description
    "nuclear factor Y, subunit A3" (NF-YA3); FUNCTIONS IN: sequence-specific DNA binding transcription factor activity; INVOLVED IN: regulation of transcription, DNA-dependent; LOCATED IN: CCAAT-binding factor complex; EXPRESSED IN: 16 plant structures; EXPRESSED DURING: 8 growth stages; CONTAINS InterPro DOMAIN/s: CCAAT-binding transcription factor, subunit B (InterPro:IPR001289), CCAAT-binding factor, conserved site (InterPro:IPR018362); BEST Arabidopsis thaliana protein match is: nuclear factor Y, subunit A8 (TAIR:AT1G17590.4); Has 684 Blast hits to 684 proteins in 161 species: Archae - 0; Bacteria - 0; Metazoa - 143; Fungi - 132; Plants - 381; Viruses - 0; Other Eukaryotes - 28 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR